The Arabidopsis thaliana Orphan Transcript Database (AtoRNA DB) is a computational effort to look for overlooked genes in the plant model Arabidopsis thaliana.
http://atornadb.bio.uni-potsdam.de/
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AtoRNA database - Universitaet Potsdam | atornadb.bio.uni-potsdam.de Reviews
https://atornadb.bio.uni-potsdam.de
The Arabidopsis thaliana Orphan Transcript Database (AtoRNA DB) is a computational effort to look for overlooked genes in the plant model Arabidopsis thaliana.
atornadb.bio.uni-potsdam.de
AtoRNA database - Technical details - Universitaet Potsdam
http://atornadb.bio.uni-potsdam.de/tech.php
Institut für Biochemie und Biologie. Orphan transcript database (AtoRNA DB) runs in a Linux Server. Data is stored in a relational database powered by MySQL. The web interface was written in PHP, and is served by the Apache httpd server. The standards for HTML and CSS, 4.01 and 2.1 respectively, were carefully followed to assure browser interoperability. All pages in this site are standard compliant, you can check with the links below.
AtoRNA database - AtoRNA Basic Information - Universitaet Potsdam
http://atornadb.bio.uni-potsdam.de/atornainfo.php
Institut für Biochemie und Biologie. Basic Information about orphan transcripts. With the following form you can retrieve basic information about the entries in the Orphan Transcripts Database. You have two options:. To retrieve information for all entries in a given chromosome (you can select more than one chromosome) using the chromosome checkboxes. Click here to check all Chromosomes:. Write here the AtoRNA codes that you want to retrieve information for.
AtoRNA database - Links - Universitaet Potsdam
http://atornadb.bio.uni-potsdam.de/links.php
Institut für Biochemie und Biologie. The National Center for Biotechnology Informacion, NCBI, creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information - all for the better understanding of molecular processes affecting human health and disease. The Arabidopsis Information Resource (TAIR) provides a comprehensive resource for the scientific community working with Arabidopsis thaliana. A database of nonc...
AtoRNA database - Universitaet Potsdam
http://atornadb.bio.uni-potsdam.de/download.php
Institut für Biochemie und Biologie. At oRNA Rice weakly conserved-180405.txt. At oRNA DB-04042005.fasta. At oRNA DB ESTs-04042005.txt. At oRNA Rice highly conserved-180405.txt. At oRNA Summary-04042005.txt. At oRNA Closest annotated gene-180405.txt.
Arabidopsis thaliana genome
http://atornadb.bio.uni-potsdam.de/cgi-bin/gbrowse/arab
Institut für Biochemie und Biologie. Genome browser - Orphan transcripts. Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Annotated non-protein coding genes (TIGR). Orphan transcripts - Features: Gene prediction. Annotated protein coding genes (TIGR). Orphan transcripts - Features: MPSS signatures. Highlight feature(s) (feature1 feature2.).
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AtoRNA database - Universitaet Potsdam
Institut für Biochemie und Biologie. Orphan Transcript Database ( AtoRNA DB. Is a computational effort to look for overlooked genes in the plant model Arabidopsis thaliana. Very briefly, this work is based on the mapping of ESTs onto the genome sequence of A. thaliana. And the subsequent removal of all already annotated transcripts. The remaining transcripts are called Orphans. This database collects a set of 591 orphan transcripts, originated from the A. thaliana. A publication related to this database ...
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