blog.yoavram.com

Yoav Ram | Blog

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Sun 13 December 2015. A resource consumption view. Consider a resource consumption. Model that follows the density of a single microbial species through time (N(t) ). And the density of that species’ limiting resource (R(t) ). Frac{dR}{dt} = -a R N \ frac{dN}{dt} = epsilon a R N ]. Organizing a poster session. Thu 18 June 2015. Yesterday (June 17th, 2015) we. Sun 22 December 2013. The mutation rate is (u ). Summary:...

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Yoav Ram | Blog | blog.yoavram.com Reviews

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PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Sun 13 December 2015. A resource consumption view. Consider a resource consumption. Model that follows the density of a single microbial species through time (N(t) ). And the density of that species’ limiting resource (R(t) ). Frac{dR}{dt} = -a R N \ frac{dN}{dt} = epsilon a R N ]. Organizing a poster session. Thu 18 June 2015. Yesterday (June 17th, 2015) we. Sun 22 December 2013. The mutation rate is (u ). Summary:...

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Yoav Ram | Blog | blog.yoavram.com Reviews

https://blog.yoavram.com

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Sun 13 December 2015. A resource consumption view. Consider a resource consumption. Model that follows the density of a single microbial species through time (N(t) ). And the density of that species’ limiting resource (R(t) ). Frac{dR}{dt} = -a R N \ frac{dN}{dt} = epsilon a R N ]. Organizing a poster session. Thu 18 June 2015. Yesterday (June 17th, 2015) we. Sun 22 December 2013. The mutation rate is (u ). Summary:...

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blog.yoavram.com

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Yoav Ram | Blog

http://blog.yoavram.com/growth-models

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Posted Sun 13 December 2015. A resource consumption view. Consider a resource consumption. Model that follows the density of a single microbial species through time (N(t) ). And the density of that species’ limiting resource (R(t) ). Frac{dR}{dt} = -a R N \ frac{dN}{dt} = epsilon a R N ]. Is the uptake rate of the microbes in question, in units of ( rho T) {-1} ). Where ( rho ). Is density and (T ). Is in (T {-1} ).

2

Yoav Ram | Blog

http://blog.yoavram.com/the-convergence-of-mean-fitness-towards-the-mutation-selection-balance

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Posted Mon 19 November 2012. The convergence of mean fitness towards the mutation-selection balance. In an eariler post. I described how the mean fitness of a population at the. Can be analysed. I assumed that the population is asexual. That only deleterious mutations. Occur, that there is no drift or recombination. And that selection is constant. By Gordo and Dionisio (2005). They wanted to use traditional models f...

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Yoav Ram | Blog

http://blog.yoavram.com/summary-evolution-of-mutation-rates-in-bacteria-denamur-and-matic-2006

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Posted Sun 14 July 2013. Summary: “Evolution of mutation rates in bacteria” (Denamur and Matic 2006). This is an executive summary of Denamur and Matic (2006). Which is a review of the literature on the evolution of the mutation rate in bactera. Deleterious mutations are 100,000-fold more frequent than beneficial mutations in. These frequencies are higher than expected under a mutation-selection balance. The ratio o...

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Yoav Ram | Blog

http://blog.yoavram.com/summary-mutation-rates-how-low-can-you-go-sniegowski-and-raynes-2013

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Posted Sun 16 June 2013. Summary: “Mutation rates: How low can you go? 8221; (Sniegowski and Raynes 2013). This is a short summary of Sniegowski and Raynes (2013). A review about the evolution of the mutation rate, with an emphasis on the Drift Barrier Hypothesis. The summary is written in my own words, with a few footnotes and highlighting that express my thoughts. Then what keeps the mutation rate from dropping to.

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Yoav Ram | Blog

http://blog.yoavram.com/mullers-ratchet

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Posted Sun 22 December 2013. This Wright-Fisher model starts with a haploid asexual population at a mutation-selection balance. The population size is (N ). The mutation rate is (u ). And the selection coefficient is (s ). Denote the frequency of the best class by (x ). And its initial value (x 0 = e {-u/s} ). The variance of (x ). Due to binomial sampling of (N ). Assuming (x ll 1 ). The expected change in (x ).

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Yoav Ram | Blog

PhD Student in Tel-Aviv University. Evolution. Mathematics. Programming. Science. Lakers. Sun 13 December 2015. A resource consumption view. Consider a resource consumption. Model that follows the density of a single microbial species through time (N(t) ). And the density of that species’ limiting resource (R(t) ). Frac{dR}{dt} = -a R N \ frac{dN}{dt} = epsilon a R N ]. Organizing a poster session. Thu 18 June 2015. Yesterday (June 17th, 2015) we. Sun 22 December 2013. The mutation rate is (u ). Summary:...

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