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Conformational Flux

Proving conformational selection is hard. Allosteric regulation of proteins is often examined using two different models. The widely-known “induced-fit” (IF) model proposes that effectors form a loose complex with inactive proteins and cause them to shift into a new, active conformation. In the competing “conformational selection” model, effectors bind to and stabilize proteins that are already in an active conformation. An upcoming paper in the. Journal of the American Chemical Society. R state) and TbL...

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Conformational Flux | conflux.mwclarkson.com Reviews

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Proving conformational selection is hard. Allosteric regulation of proteins is often examined using two different models. The widely-known “induced-fit” (IF) model proposes that effectors form a loose complex with inactive proteins and cause them to shift into a new, active conformation. In the competing “conformational selection” model, effectors bind to and stabilize proteins that are already in an active conformation. An upcoming paper in the. Journal of the American Chemical Society. R state) and TbL...

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Conformational Flux | conflux.mwclarkson.com Reviews

https://conflux.mwclarkson.com

Proving conformational selection is hard. Allosteric regulation of proteins is often examined using two different models. The widely-known “induced-fit” (IF) model proposes that effectors form a loose complex with inactive proteins and cause them to shift into a new, active conformation. In the competing “conformational selection” model, effectors bind to and stabilize proteins that are already in an active conformation. An upcoming paper in the. Journal of the American Chemical Society. R state) and TbL...

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conflux.mwclarkson.com

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Commentary » Conformational Flux

http://conflux.mwclarkson.com/category/commentary

Don’t look for the structure. It surprises me how often I hear students, postdocs, and even professors talk about determining the. The most dramatic counterexamples to the idea of a neat, punctate energy well come from proteins that adopt several different folds in the native state. One relevant case is lymphotactin. Than it interacts with micelles. For proteins that interconvert between several different physiologically-relevant folds, one is never pursuing the. Structure, but rather a. My point here is...

2

Philosophy of Science » Conformational Flux

http://conflux.mwclarkson.com/category/philosophy-of-science

While reading Jane Stemwedel’s musings on the missing gray zone in animal-research discussions. It occurred to me that when taken as a philosophical position, rather than an emotional appeal, the animal-rights people are really demanding that all bioscience be ended. I don’t mean to make the old slippery-slope argument here; rather, I mean to say that when viewed in the light of cold reason. Given that anthropomorphic empathy is a dead end, the next line on animals is that they have intrinsic rights, esp...

3

Chemistry » Conformational Flux

http://conflux.mwclarkson.com/category/chemistry

Can oil and water mix? Suggests that sufficiently long alkanes might undergo a similar transition, even though they don’t have any chemical groups that like to interact with water. Researchers from Purdue University performed a variety of simulations of linear alkanes. Configuration. As chain length increases, however, the numerous additional degrees of freedom allow a chain to adopt a more compact conformation that decreases the penalty incurred by interacting with water. Gold dust vs. the virus. Use is...

4

Drug Discovery » Conformational Flux

http://conflux.mwclarkson.com/category/medicine/drug-discovery

A step towards incorporating dynamics data into drug design. My field-cycling article (previous post) is part of a dynamics-focused topical issue of JBNMR. In my next few science posts I’ll describe some of the other contributions. The dynamics of the protein target, not the small molecules it binds. If dynamics studies are to make the maximum possible contribution to pharmaceutical sciences, the motions of the ligand must be characterized. In their article in Journal of Biomolecular NMR. Pro, only the r...

5

Enzymology » Conformational Flux

http://conflux.mwclarkson.com/category/biochemistry/enzymes

Proving conformational selection is hard. Allosteric regulation of proteins is often examined using two different models. The widely-known “induced-fit” (IF) model proposes that effectors form a loose complex with inactive proteins and cause them to shift into a new, active conformation. In the competing “conformational selection” model, effectors bind to and stabilize proteins that are already in an active conformation. An upcoming paper in the. Journal of the American Chemical Society. R state) and TbL...

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interfacialdigressions.blogspot.com

Interfacial Digressions: September 2013

http://interfacialdigressions.blogspot.com/2013_09_01_archive.html

Friday, September 13, 2013. Another really short lit link post. A cavity QED approach to magnetic resonance. That was just published - figured a few of you might be interested in this sort of thing. In other news, have a fair amount of NMR data myself to work through and understand. Speaking of which, back to it. Read more! Subscribe to: Posts (Atom). The Great Molecular Crapshoot. Another really short lit link post. East Coast, United States. Insert witty description here.). View my complete profile.

interfacialdigressions.blogspot.com

Interfacial Digressions: Break On Through To the Other Side

http://interfacialdigressions.blogspot.com/2012/03/break-on-through-to-other-side.html

Thursday, March 8, 2012. Break On Through To the Other Side. I was reminded to share this page. In light of some recent. Elsewhere. I would also encourage interested readers to check out the rest of Prof. Sethna's web site - there's a whole lot of great material on numerous interesting topics in physics and "complex systems," as well as what seems to be a nice, modern. Introduction to statistical mechanics. April 24, 2012 at 12:17 AM. April 25, 2012 at 12:03 AM. Subscribe to: Post Comments (Atom).

interfacialdigressions.blogspot.com

Interfacial Digressions: Capitalism.

http://interfacialdigressions.blogspot.com/2014/07/capitalism.html

Thursday, July 31, 2014. My non-research career seems to be going well, at least insofar as I can manage to say 2.5 months into it. Relocation will occur in August, and I will be able to reduce the amount of time I spend on the current commute. It's been quite an experience, and to be honest, I think it will keep me from being bored for a couple of years at the very least. Talk to me in a year, though. August 1, 2014 at 10:33 PM. August 2, 2014 at 12:57 PM. Subscribe to: Post Comments (Atom).

interfacialdigressions.blogspot.com

Interfacial Digressions: October 2013

http://interfacialdigressions.blogspot.com/2013_10_01_archive.html

Wednesday, October 9, 2013. It's been an interesting week so far, with the vesicle transport. And now multiscale modeling. Being recognized. While I clearly missed the ball this year in contrast to last year, I suppose it still leaves a potential Prize for molecular dynamics to be awarded in Chemistry, or perhaps Physics without the Higgs juggernaut lying in wait. Subscribe to: Posts (Atom). The Great Molecular Crapshoot. East Coast, United States. Insert witty description here.). View my complete profile.

interfacialdigressions.blogspot.com

Interfacial Digressions: May 2014

http://interfacialdigressions.blogspot.com/2014_05_01_archive.html

Friday, May 2, 2014. I have escaped the chains of academia and will be gainfully employed in the private sector starting later this month. Still on the East Coast, though. Can't win them all. I may get around to more regular posting in the future, although that will depend on timing and cognitive momentum. Read more! Subscribe to: Posts (Atom). The Great Molecular Crapshoot. East Coast, United States. Insert witty description here.). View my complete profile.

interfacialdigressions.blogspot.com

Interfacial Digressions: January 2013

http://interfacialdigressions.blogspot.com/2013_01_01_archive.html

Monday, January 7, 2013. I hope that everyone's 2013 looks to be promising and full of potential in all possible areas. We will see how far I get with my various scientific self-improvement goals this year (read up on relativistic QM/QC - I have a borrowed copy of Dyall and Faegri's text. Kind of poking through it slowly; my going-on-a-couple-years goal of getting Shaik and Hiberty's text. On VB theory under my belt; and more on my various programming self-study projects). Subscribe to: Posts (Atom).

interfacialdigressions.blogspot.com

Interfacial Digressions: July 2014

http://interfacialdigressions.blogspot.com/2014_07_01_archive.html

Thursday, July 31, 2014. My non-research career seems to be going well, at least insofar as I can manage to say 2.5 months into it. Relocation will occur in August, and I will be able to reduce the amount of time I spend on the current commute. It's been quite an experience, and to be honest, I think it will keep me from being bored for a couple of years at the very least. Talk to me in a year, though. Read more! Subscribe to: Posts (Atom). The Great Molecular Crapshoot. East Coast, United States.

interfacialdigressions.blogspot.com

Interfacial Digressions: Another really short lit link post.

http://interfacialdigressions.blogspot.com/2013/09/another-really-short-lit-link-post.html

Friday, September 13, 2013. Another really short lit link post. A cavity QED approach to magnetic resonance. That was just published - figured a few of you might be interested in this sort of thing. In other news, have a fair amount of NMR data myself to work through and understand. Speaking of which, back to it. Subscribe to: Post Comments (Atom). The Great Molecular Crapshoot. Another really short lit link post. East Coast, United States. Insert witty description here.). View my complete profile.

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Conformational Flux

Proving conformational selection is hard. Allosteric regulation of proteins is often examined using two different models. The widely-known “induced-fit” (IF) model proposes that effectors form a loose complex with inactive proteins and cause them to shift into a new, active conformation. In the competing “conformational selection” model, effectors bind to and stabilize proteins that are already in an active conformation. An upcoming paper in the. Journal of the American Chemical Society. R state) and TbL...

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