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DIAG Computing | Data-Intensive Academic Grid

Data Intensive Academic Grid (DIAG), funded by the National Science Foundation, is designed to provide large scale research computing infrastructure to the bioinformatics community.

http://www.diagcomputing.org/

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The Institute for Genome Sciences

The Institute for Genome Sciences

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DIAG Computing | Data-Intensive Academic Grid | diagcomputing.org Reviews
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Data Intensive Academic Grid (DIAG), funded by the National Science Foundation, is designed to provide large scale research computing infrastructure to the bioinformatics community.
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DIAG Computing | Data-Intensive Academic Grid | diagcomputing.org Reviews

https://diagcomputing.org

Data Intensive Academic Grid (DIAG), funded by the National Science Foundation, is designed to provide large scale research computing infrastructure to the bioinformatics community.

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jira.diagcomputing.org jira.diagcomputing.org

System Dashboard - DIAG

Access more options (Alt d). Access more options (Alt p). Access more options (Alt i). Macrobrowser.freeform.example.title. Macrobrowser.freeform.desc.title. Type or paste the gadgets URL below. By adding a gadget to the directory, you are making the gadget available for people to use on their dashboards. Only add gadgets that you trust! Gadgets can allow unwanted or malicious code onto your web page. A gadgets URL looks something like this:. Http:/ example.com/my-gadget-location/my-gadget.xml. When you ...

wiki.diagcomputing.org wiki.diagcomputing.org

DIAG Wiki

Welcome to the DIAG Wiki. If encounter any problems, or require assistance with how to perform a specific task, you should start by checking here for help and documentation. We also encourage you to improve the documentation yourself if you feel it is incomplete or unclear. If you are unable to find an answer to your question or are still experiencing problems, please let us know by Reporting a problem. Nimbus and Cloud Client. Nimbus and Amazon EC2 tools. This page has been accessed 115,919 times.

INTERNAL PAGES

diagcomputing.org diagcomputing.org
1

DIAG - Projects

https://diagcomputing.org/about/projects.php

Login not recognized, please retry. Login not recognized, please retry. DIAG is an important component of several bioinformatics related research projects. DIAG is currently providing computational resources for several bioinformatics software development projects, analysis efforts, and other initiatives that require large scale and highly performant compute resources and storage. Some of these are detailed below. In addition, the manual annotation tool Manatee.

2

DIAG - Funding

https://diagcomputing.org/about/funding.php

Login not recognized, please retry. Login not recognized, please retry. Large-scale analysis has now become an integral part of nearly all research areas in biology. Institute for Genome Sciences. Lawrence Berkeley National Laboratory. University of Virginia School of Medicine. This project is supported by the National Science Foundation under Grant No. 0959894 titled MRI-R2: Acquisition of Data Intensive Academic Grid (DIAG).

3

DIAG - Software

https://diagcomputing.org/resources/software.php

Login not recognized, please retry. Login not recognized, please retry. DIAG offers a wide range of bioinformatics tools to help researchers in their studies. National Center for Biotechnology Information. HMMER by HHMI Janelia Farm. Johns Hopkins Bloomberg School of Public Health.

4

DIAG - DIAG User Community

https://diagcomputing.org/about/community.php

Login not recognized, please retry. Login not recognized, please retry. The DIAG user community is a diverse group of individuals from a variety of backgrounds. This community spans the globe, as visible in the map below.

5

DIAG - Ergatis

https://diagcomputing.org/ergatis

Login not recognized, please retry. Login not recognized, please retry. Ergatis is a web based system for creating, modifying and executing bioinformatics pipelines. Ergatis Project at Sourceforge. Because of its flexibility, scalability, and ease-of-use, Ergatis has been an important part of the annotation of several large, eukaryotic organisms, including Aedes aegypti. Without concerning themselves with installation and configuration issues. Page We will notify you when the system is available for use.

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clovr.org clovr.org

Getting Started | CloVR

http://clovr.org/getting-started

Automated Sequence Analysis from Your Desktop. You can start using CloVR either through a local instance of the CloVR VM or by running CloVR on Amazon’s EC2 cloud or the DIAG cloud. Running the CloVR VM. Installing CloVR on the desktop will enable you to execute pipelines locally. The CloVR VM also allows for optional access to cloud resources for additional processing power. Below are step-by-step instructions on how to start running CloVR on your local computer. The latest CloVR release.

clovr.org clovr.org

Blog | CloVR

http://clovr.org/category/blog

Automated Sequence Analysis from Your Desktop. Great post about using CloVR for microbial genome annotation Microbial Annotation in the Cloud: CloVR and Ion Torrent. October 5, 2012. Comments Off on CloVR and IonTorrent. CloVR 454 and Illumina assembly. Ecoli 454 500k dataset. Ecoli 4M Illumina paired-end. Using the CloVR Dashboard to run assembly pipelines. Once loaded the page should look like the following:. We can select data found under the. Folder here via the Select file from image. Button or can ...

clovr.org clovr.org

Releases | CloVR

http://clovr.org/developers/releases

Automated Sequence Analysis from Your Desktop. All public releases are listed below. Clovr-standard-2016-06-07-02-13-51 vmdk.tar.gz (.vmdk). Clovr-standard-2016-06-07-02-13-51 vdi.tar.gz (.vdi). June 7, 2016. Clovr-standard-2015-08-06-19-44-18 vmdk.tgz (.vmdk). Clovr-standard-2015-08-06-19-44-18 vdi.tgz (.vdi). Aug 27, 2015. Clovr-standard-2014-10-07-21-11-54 vmdk.tgz (.vmdk). Clovr-standard-2014-10-07-21-11-54 vdi.tgz (.vdi). Oct 10, 2014. Clovr-standard-2012-11-16-20-05-15 vmdk.tgz (.vmdk). Nov 27, 2012.

igs.umaryland.edu igs.umaryland.edu

Institute for Genome Sciences - Introduction

http://igs.umaryland.edu/resources/irc

Cutting edge sequencing and computing. Population and Evolutionary Genomics. Post Docs and Students. Informatics Resource Center - Introduction. Interested in more info about a bioinformatics career at IGS? The Informatics Resource Center ( IRC. To provide comprehensive analysis for projects. The IRC has developed and maintained several tools and pipelines to facilitate research. Highlights of IRC's work include the NIH Human Microbiome Project Data Analysis and Coordination Center ( HMP DACC.

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