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Hobbes Genome Sequence Mapping, UC Irvine

Institute for Genomics and Bioinformatics. Bren School of ICS. Hobbes is a sequence mapping software in development at School of Information and Computer Sciences. We released Hobbes3 ( Hobbes3 source code. Hobbes3 significantly improves accuracy and mapping speed for edit distance in all mapping mode (and m mapping mode as well). A new version of Hobbes2 has been released ( Hobbes 2.1 source code. This version supports m mapping mode. We released Hobbes2 ( Hobbes 2.0 source code. Under a BSD license.

http://hobbes.ics.uci.edu/

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Hobbes Genome Sequence Mapping, UC Irvine | hobbes.ics.uci.edu Reviews
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Institute for Genomics and Bioinformatics. Bren School of ICS. Hobbes is a sequence mapping software in development at School of Information and Computer Sciences. We released Hobbes3 ( Hobbes3 source code. Hobbes3 significantly improves accuracy and mapping speed for edit distance in all mapping mode (and m mapping mode as well). A new version of Hobbes2 has been released ( Hobbes 2.1 source code. This version supports m mapping mode. We released Hobbes2 ( Hobbes 2.0 source code. Under a BSD license.
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Hobbes Genome Sequence Mapping, UC Irvine | hobbes.ics.uci.edu Reviews

https://hobbes.ics.uci.edu

Institute for Genomics and Bioinformatics. Bren School of ICS. Hobbes is a sequence mapping software in development at School of Information and Computer Sciences. We released Hobbes3 ( Hobbes3 source code. Hobbes3 significantly improves accuracy and mapping speed for edit distance in all mapping mode (and m mapping mode as well). A new version of Hobbes2 has been released ( Hobbes 2.1 source code. This version supports m mapping mode. We released Hobbes2 ( Hobbes 2.0 source code. Under a BSD license.

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hobbes.ics.uci.edu hobbes.ics.uci.edu
1

Hobbes Genome Sequence Mapping, UC Irvine

http://hobbes.ics.uci.edu/examples.shtml

Institute for Genomics and Bioinformatics. Bren School of ICS. 1 Human Genome (HG18 - hg18.fa. 500k single-end reads of length 76bp. We picked the fist 500k reads from DRR000617 1.fastq. 1 million single-end reads of length 100bp. We picked the first 1 million reads from SRR062634 1.filt.fastq. Hg100 1m pe1.fq. Hg100 1m pe2.fq. 1 million paired-end reads of length 100bp. We picked the first 1 million pairs of reads from SRR062634 1.filt.fastq and SRR062634 2.filt.fastq. Running Hobbes for Single-End Reads.

2

Hobbes Genome Sequence Mapping, UC Irvine

http://hobbes.ics.uci.edu/manual.shtml

Institute for Genomics and Bioinformatics. Bren School of ICS. Ambiguous bases such as the 'N' character are treated as mismatches. Manual page for the previous versions (Hobbes 1.x) is here. We developed and tested Hobbes3 under Ubuntu 14.04.2 LTS 64-bit. GCC Hobbes3 uses GCC builtin functions. We used GCC 4.8.2. CMake Required for compiling Hobbes3 (sudo apt-get install cmake). The following libraries are required if you want to map compressed reads. Download the Hobbes3 source from here. The Hobbes3 b...

3

Hobbes Genome Sequence Mapping, UC Irvine

http://hobbes.ics.uci.edu/download.shtml

Institute for Genomics and Bioinformatics. Bren School of ICS. Hobbes3 (Hobbes 3.0) Source Code. Please consult the manual. For system requirements and compilation instructions. Hobbes 2.1 Source Code. Hobbes 2.0 Source Code. Hobbes 1.5 Source Code. Hobbes 1.4 Source Code. Hobbes 1.3 Source Code. Hobbes3 (Hobbes 3.0) Source (July 13, 2015). Hobbes2 (Hobbes 2.1) Source and Binaries (December 3, 2013). Hobbes2 (Hobbes 2.0) Source (June 17, 2013). Version 1.3 Source (January 23, 2012).

4

Hobbes Genome Sequence Mapping, UC Irvine

http://hobbes.ics.uci.edu/index.shtml

Institute for Genomics and Bioinformatics. Bren School of ICS. Hobbes is a sequence mapping software in development at School of Information and Computer Sciences. We released Hobbes3 ( Hobbes3 source code. Hobbes3 significantly improves accuracy and mapping speed for edit distance in all mapping mode (and m mapping mode as well). A new version of Hobbes2 has been released ( Hobbes 2.1 source code. This version supports m mapping mode. We released Hobbes2 ( Hobbes 2.0 source code. Under a BSD license.

5

Hobbes Genome Sequence Mapping, UC Irvine

http://hobbes.ics.uci.edu/faq.shtml

Institute for Genomics and Bioinformatics. Bren School of ICS. This FAQ provides answers to basic questions about Hobbes. You may also refer to the following papers for the technical details of Hobbes. Hobbes: optimized gram-based methods for efficient read alignment", Nucleic Acid Research 2011. Improving read mapping using additional prefix grams", BMC Bioinformatics 2014. Why doesn't Hobbes align any of the reads? What part of the code requires/uses popcnt instruction? How do I fix compilation errors?

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dmaf.biochem.uci.edu dmaf.biochem.uci.edu

NGS Data Analysis | GHTF

http://dmaf.biochem.uci.edu/content/ngs-data-analysis

Genomics High Throughput Facility Staff. CFCCC Bioinformatics and Statistical Analysis. Directions to UC Irvine. UC Irvine Campus Map. Illumina HT DNA sequencing equipment. CBot Cluster Generation System. Covaris S2 Focused Acoustic Shearer. Array Automation's ArrayPlex - Automated/Robotic Instrumentation. Affymetrix Guidelines and Sample Preparation. Chao Family Comprehensive Cancer Center. NGS data analysis workflow:. Here we provide a general workflow for NGS data analysis with. NSG sequencers contrib...

infolab.chonbuk.ac.kr infolab.chonbuk.ac.kr

INFOLAB

http://infolab.chonbuk.ac.kr/projects.html

CSE, Chonbuk National University. PSITRC (public safety information technology research center) (6/2015 present). Funding: Ministry of Science, ICT and Future Planning, Korea. 한국 풍물굿/농악 자료조사, 수집 및 DB화 (8/2014 7/2017). Funding: National Research Foundation of Korea. String similarity based efficient data management system for large scale unstructured data (5/2010 4/2013). Funding: Korea Research Foundation, Korea. MapReduce Online기반 SNS 서비스 환경 구축 및 분석 (3/2010 2/2011). Joint Project with ETRI. Designing an...

cbcl.ics.uci.edu cbcl.ics.uci.edu

software – Computational Biology and Computational Learning -- CBCL

https://cbcl.ics.uci.edu/doku.php/software

Computational Biology and Computational Learning - CBCL. CBCL Lab @ UCI. Most software published by our group is also available on github.com/uci-cbcl. Hobbes is a tool for very fast, very accurate short-read sequence alignment. Hobbes has its own homepage. Parallel genome assembly using Hyracks, available at https:/ github.com/uci-cbcl/genomix. PyLOH is a tool for discovering copy number variations in cancer genomes. PyLOH is available at https:/ github.com/uci-cbcl/PyLOH. Site-specific phylogenetic ana...

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Notre cuisine est 100% bio. À partir de produits frais et de première qualité. Parce que les pesticides, les herbicides et les fertilisants artificiels ne sont ni healthy ni yummy! Parce que, pour nous, les fruits, les légumes et les graines sont une grande source d’inspiration. Par ailleurs, nous sommes convaincus que la cuisine végétarienne est la cuisine du futur alors autant avoir un temps d’avance. Retrouvez toute notre actualité sur notre page Facebook. Ecrivez-nous : contact@hobbes.fr.

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Hobbes Genome Sequence Mapping, UC Irvine

Institute for Genomics and Bioinformatics. Bren School of ICS. Hobbes is a sequence mapping software in development at School of Information and Computer Sciences. We released Hobbes3 ( Hobbes3 source code. Hobbes3 significantly improves accuracy and mapping speed for edit distance in all mapping mode (and m mapping mode as well). A new version of Hobbes2 has been released ( Hobbes 2.1 source code. This version supports m mapping mode. We released Hobbes2 ( Hobbes 2.0 source code. Under a BSD license.

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hobbes.nmsu.edu hobbes.nmsu.edu

Welcome to Hobbes

To hobbes.nmsu.edu, probably the largest and possibly the best OS/2-related FTP and WEB site in existence. This archive is run as a service by the Department of Information and Communication Technologies. At New Mexico State University. In Las Cruces, NM, USA. Our Donate To Hobbes. Web page to read a little history about hobbes and see how you may be able to contribute to its future. Quick links to major directories:. New files not yet cataloged. New files cataloged within the last week.