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Jarvist Moore Frost: Academic blog

Jarvist Moore Frost: Academic blog

http://jarvist.github.io/

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Jarvist Moore Frost: Academic blog | jarvist.github.io Reviews
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Jarvist Moore Frost: Academic blog
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1 bookclub
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6 soft mode tunnelling
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8 embarrassing embarrassingly parallel
9 writing scientific papers
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Jarvist Moore Frost: Academic blog | jarvist.github.io Reviews

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Jarvist Moore Frost: Academic blog

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1

Mark Tuckerman talk: Free energy based structure prediction

http://jarvist.github.io/post/2016-04-19-mark-tuckerman-talk-free-energy-structure-prediction

Jarvist Moore Frost: Academic blog. Jarvist Moore Frost: Academic blog. Mark Tuckerman talk: Free energy based structure prediction. A point Mark made at the start and repeatedly was that we need to go beyond the static structure picture - we need the entropic contribution, and we therefore need to be able to calculate free energies. PBE0 TS; 6-311g* (d,p). 25000 Unit cells were generated with. A software package I had not heard of, but which seems pretty extensive [3]. Their 4th lowest energy structure ...

2

Writing scientific papers

http://jarvist.github.io/post/writing-scientific-papers

Jarvist Moore Frost: Academic blog. Jarvist Moore Frost: Academic blog. Updated 2016-03-12 to re-add the links). It used to be that scientists would work continuously on a problem, and then publish when a ‘breakthrough’ had been made. To be honest I think we would have a better scientific corpus if this was still the case - careful work on a hard problem for a few years until we gain some traction, then write it up for the benefit of anyone who could take it elsewhere. Available online) is also very usef...

3

Gnuplot

http://jarvist.github.io/tags/gnuplot

Jarvist Moore Frost: Academic blog. Jarvist Moore Frost: Academic blog.

4

Snippet: New Julia paper from the developers

http://jarvist.github.io/post/snippet-new-julia-paper-from-the-developers

Jarvist Moore Frost: Academic blog. Jarvist Moore Frost: Academic blog. Snippet: New Julia paper from the developers. Looks to be a great reference, with plenty of code snippets getting bits of numerical methods working, finishing on the random-matrix semicircle theory, with @parallel speedup! Wish this was around when I was figuring out my little toy model… https:/ github.com/jarvist/LongSnakeMoan/blob/master/Sturm-DoS/Sturm Drang.jl. Http:/ arxiv.org/abs/1411.1607.

5

Embarrassing embarrassingly parallel

http://jarvist.github.io/post/embarrassing-embarrassingly-parallelism

Jarvist Moore Frost: Academic blog. Jarvist Moore Frost: Academic blog. I gave up OPENMP’ing my Monte Carlo code about a year ago. I was trying to do it at the level of MC moves, and there are massive issues here in that the different threads are trying to sample and update the same simulation space - leading to segfaults as the variables crash into one another. Pragma omp parallel for reduction( :dE). Before the start of the for-loop nest; and a recompile with.

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Jarvist Moore Frost: Academic blog

Jarvist Moore Frost: Academic blog. Jarvist Moore Frost: Academic blog. Publication history in LaTeX from Google Scholar. Constrained geometry optimisation in Gaussian. Electron Phonon Coupling with Soft Modes. Royal Society 2015 URF Scheme - Lay Report. Mark Tuckerman talk: Free energy based structure prediction. Delta SCF: Calculating work functions of molecular electronic materials. Talks and Seminars at Bath University. Organising computational job workflow, as you go: freck. Snippet: SSH at Bath Uni.

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