chip-enrich.med.umich.edu
ChIP-Enrich: Gene set enrichment testing for ChIP-seq data
http://chip-enrich.med.umich.edu/chipMain.jsp
ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. Output includes summary plots, peak to gene assignments,and enrichment (and depletion) results including odds ratio, p-value, and FDR for each gene set. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha...
ws.ncibi.org
NCIBI Web Services - Long Running Services
http://ws.ncibi.org/longrunning.html
Long Running Services Web Service Guide. The NCIBI Long Running Services are available through a client side Java API. The services can also be accessed as a set of REST based services. The following documentation describes the Java API and the REST URL services if you wish to access these services using a scripting language such as Perl. Null & results.getResponseValue().getTask().getStatus()! The general structure above will be followed for all requests. This is true whether you use the provided Ja...
sartorlab.ccmb.med.umich.edu
Software | The Sartor Lab
http://sartorlab.ccmb.med.umich.edu/software
Skip to main content. Department of Computational Medicine and Bioinformatics. Http:/ broad-enrich.med.umich.edu. Http:/ conceptgen.ncibi.org. Http:/ lrpath.ncibi.org/. Find Medical Subject Headings (MeSH terms) enriched for a particular compound or compounds enriched for a particular MeSH term. Metab2MeSH uses a statistical approach to reliably and automatically annotate metabolites with the concepts defined in MeSH, the National Library of Medicine's controlled vocabulary for biomedical concepts...
