manual.cytoscape.org

Cytoscape 3.4.0 User Manual — Cytoscape User Manual 3.4.0 documentation

3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). 25 Cytoscape Privacy Policy. Cytoscape 3.4.0 User Manual. Cytoscape 3.4.0 User Manual. 3 Command Line Arguments. 4 Quick Tour of Cytoscape.

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Cytoscape 3.4.0 User Manual — Cytoscape User Manual 3.4.0 documentation | manual.cytoscape.org Reviews

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3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). 25 Cytoscape Privacy Policy. Cytoscape 3.4.0 User Manual. Cytoscape 3.4.0 User Manual. 3 Command Line Arguments. 4 Quick Tour of Cytoscape.

<META> KEYWORDS

1 cytoscape user manual

2 stable

3 1 introduction

4 2 launching cytoscape

5 5 creating networks

6 6 nested networks

7 14 app manager

8 15 command tool

9 17 networkanalyzer

10 18 cytoscape preferences

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cytoscape user manual,stable,1 introduction,2 launching cytoscape,5 creating networks,6 nested networks,14 app manager,15 command tool,17 networkanalyzer,18 cytoscape preferences,21 rendering engine,docs,raquo;,edit on github,table of contents,next,latest

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Cytoscape 3.4.0 User Manual — Cytoscape User Manual 3.4.0 documentation | manual.cytoscape.org Reviews

https://manual.cytoscape.org

3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). 25 Cytoscape Privacy Policy. Cytoscape 3.4.0 User Manual. Cytoscape 3.4.0 User Manual. 3 Command Line Arguments. 4 Quick Tour of Cytoscape.

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manual.cytoscape.org

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11. Finding and Filtering Nodes and Edges — Cytoscape User Manual 3.4.0 documentation

http://manual.cytoscape.org/en/stable/Finding_and_Filtering_Nodes_and_Edges.html

3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. Interactive Filter Application Mode. Grouping and Organizing Filters. Working with Narrowing and Chainable Filters. 113 The Select Menu. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting).

2

4. Quick Tour of Cytoscape — Cytoscape User Manual 3.4.0 documentation

http://manual.cytoscape.org/en/stable/Quick_Tour_of_Cytoscape.html

3 Command Line Arguments. 4 Quick Tour of Cytoscape. 45 The View Navigator. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). 25 Cytoscape Privacy Policy. 4 Quick Tour of Cytoscape. 4 Quick Tour of Cytoscape. Open recently used session file.

3

21. Rendering Engine — Cytoscape User Manual 3.4.0 documentation

http://manual.cytoscape.org/en/stable/Rendering_Engine.html

3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 211 What is Level of Detail (LOD)? Parameters for Controlling LOD. Force to Display Detail. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). 25 Cytoscape Privacy Policy. Low LOD vs High LOD.

4

2. Launching Cytoscape — Cytoscape User Manual 3.4.0 documentation

http://manual.cytoscape.org/en/stable/Launching_Cytoscape.html

A quick note on upgrading your Cytoscape installation. Note on Memory Consumption. Overall Memory Size for Cytoscape. 3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). Wide or Dual Monitor.

5

10. Column Data Functions and Equations — Cytoscape User Manual 3.4.0 documentation

http://manual.cytoscape.org/en/stable/Column_Data_Functions_and_Equations.html

3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 102 The Formula Builder. 103 A Note for App Writers. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). 25 Cytoscape Privacy Policy. 10 Column Data Functions and Equations. Formula results mu...

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User Documentation

http://www.cytoscape.org/documentation_users.html

Introduction to Cytoscape (for 2.x). Old tutorials for 2.x. Nature Protocols sample workflow paper. By Cytoscape Consortium - a quick overview of Cytoscape functions. By Cytoscape Consortium - a quick overview of Cytoscape App (Plugin) universe. Original Cytoscape paper (2003). Latest Cytoscape paper (2011). Manuals for older versions. Introduction to Cytoscape (Latest). International Conference on Systems Biology Demos. Cytoscape presentation slides at Speaker Deck. User FAQ at Biostar.

wiki.cytoscape.org

Welcome - Cytoscape Wiki

http://wiki.cytoscape.org/Welcome

Revert to this revision. Is an open source platform for network data integration, analysis, and visualization. ( Read more about Cytoscape. This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know. To edit wiki pages, ask an existing wiki user to create a name and temporary password for you at sign up for an account. Then ask the wiki user to add your new user name to the editor list. See all pages in this wiki. Start page for app developers.

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3 Command Line Arguments. 4 Quick Tour of Cytoscape. 7 Supported Network File Formats. 8 Node and Edge Column Data. 9 Ontology and Annotation Import. 10 Column Data Functions and Equations. 11 Finding and Filtering Nodes and Edges. 12 Navigation and Layout. 22 Publish Your Data. 23 Cytoscape.js and Cytoscape. 24 Programmatic Access to Cytoscape Features (Scripting). 25 Cytoscape Privacy Policy. Cytoscape 3.4.0 User Manual. Cytoscape 3.4.0 User Manual. 3 Command Line Arguments. 4 Quick Tour of Cytoscape.

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