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Open Source at SciLifeLabOpen source projects at SciLifeLab
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Open source projects at SciLifeLab
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Open Source at SciLifeLab | opensource.scilifelab.se Reviews
https://opensource.scilifelab.se
Open source projects at SciLifeLab
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Open Source at SciLifeLab » genmod
http://opensource.scilifelab.se/projects/genmod
Annotate genetic patterns of inheritance. Annotates patterns of inheritance in VCF files and handles arbitrary pedigrees. The idea is to set a standard for when we say that a certain pattern is followed and then annotate all variants as accurate as possible. This is a effective way to reduce the number of potential deleterious variants in family projects. Is a leightweight, multiprocessing command line tool that can annotate millions of variants in minutes. Autsomal Recessive, denoted ‘AR’.
Open Source at SciLifeLab » Chanjo
http://opensource.scilifelab.se/projects/chanjo
Coverage analysis for clinical sequencing. Chanjo is mainly used as a command line utility backed by a thin Python API. Chanjo init - setup $. Chanjo load /path/to/sambamba.output.bed $. Chanjo calculate mean sample1 {. 9092, "mean coverage". To learn more about Chanjo and how you can use it to gain a better understanding of sequencing coverage you should start by. Checking out the demo. Whats new in Chanjo 3.0? Chanjo 3 is a significant improvement of the previous versions. The primary change is Sambamba.
Open Source at SciLifeLab » FRC
http://opensource.scilifelab.se/projects/frc
A tool able to evaluate and rank de novo assemblies and assemblers. FRC has been successfully applied in several de novo assembly studies, including The Spruce Genome Project. Git clone https:/ github.com/vezzi/FRC align.git cd. FRC align mkdir build cd. Build cmake . make. You will find the binaries in the main directory under bin. In case of problems the majority of the times there is a problem with the local installation of boost. How to use FRC. Use the same parameters. Use PE library with largest re...
Open Source at SciLifeLab » Cluster Flow
http://opensource.scilifelab.se/projects/clusterflow
Automate and standardise bioinformatics analyses on cluster environments. What is Cluster Flow? Cluster Flow is a command-line program which uses common cluster managers to run analysis pipelines. It currently supports GRIDEngine (SGE), LSF and SLURM as well as running locally on any unix system. Benefits of using Cluster Flow:. Routine analyses are very quick to run. Pipelines use identical parameters, standardising analysis and making results more reproducable. Very lightweight and flexible.
Open Source at SciLifeLab » CONCOCT
http://opensource.scilifelab.se/projects/concoct
Clustering cONtigs with COverage and ComposiTion. Metagenomic binning is the task of clustering metagenomic sequences into ‘bins’ corresponding to coherent taxonomical units. CONCOCT performs unsupervised binning of metagenomic contigs using nucleotide composition and coverage data in multiple samples. Concoct - composition file contigs.fa - coverage file coverage table.tsv -b concoct output/. For the most comprehensive information about the usage and function of CONCOCT so far, see the complete example.
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Robin Andeer | Open Source Portals
http://www.robinandeer.com/blog/2014/09/02/open-source-portals
September 2, 2014. Open sourcing a software project is like owning a pet. Even though it involves a lot of work and responsibilities the benefits speak for themselves:. You learn to collaborate with and enlist the help of other developers (for free). You feel motivated to follow best practices like continuous and automated testing to alleviate said collaboration. It forces you to think about how to document your code and its usage. They guys over at LayerVault. Our open source portal. Motivate more time ...
Open Source Portals
https://robinandeer.svbtle.com/open-source-portals
Robin Andeer is writing on the Svbtle. September 2, 2014. Open sourcing a software project is like owning a pet. Even though it involves a lot of work and responsibilities the benefits speak for themselves:. You learn to collaborate with and enlist the help of other developers (for free). You feel motivated to follow best practices like continuous and automated testing to alleviate said collaboration. It forces you to think about how to document your code and its usage. They guys over at LayerVault.
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Index of / | Ruckus Wireless Open Source Software
Ruckus Wireless Open Source. Http:/ opensource.ruckuswireless.com. Open Source software provided by Ruckus Wireless. Software for the FlexMaster product line. Software for the MediaFlex product line. Software for the MetroFlex product line. Software for the SmartCell Insight product line. Software for the ZoneFlex product line. Snif 1.5.2 2003-04 Kai Blankenhorn. Valid XHTML 1.1.
Homepage
Broadband and Residential terminals. The software available for download comprises code developped by third parties and distributed under licence. Please refer to the downloaded file in order to identify the specific licence covering each software component. The list of such licences includes but is not limited to : GPL, LGPL, BSD, . Broadband and residential terminals. 2012 SAGEMCOM Mentions Légales.
SAINS Opensource Competition 2013
Students from Institutions of Higher Learning are invited to participate in this competition. Organized by Sarawak Information Systems Sdn. Bhd. (SAINS). Submit your Mobile Application with Open Source Technology Today! The Competition begins on June 2015 and the closing date for the competition is 31 October, 2015. So hurry, and don't miss this opportunity!
Samsung Opensource Release Center
Gear and MP3 Player. Samsung Open Source Release Center more. Samsung Electronics offers Open Source Codes from various open source communities through this website. You can download source codes and feel free to post your message to us. System LSI is working on providing source codes for the Exynos 4 family, utilized on the Origen developers board. Full availability of the integrated source code will be available by the end of 2012. Availability on Git server will be initiated in Nov'12.
opensource.scandurrastudio.com
open source / sorgente aperta / sala da concerto
Open Source / Sorgente Aperta / Sala da Concerto. AILATI. RIFLESSI DAL FUTURO Padiglione Italia / / 29 August 21 November 2010 la Biennale di Venezia 12. Mostra internazionale di Architettura. Scandurrastudio / ilaria capua. Il mio lavoro è sul controllo che il potere esercita sul sapere. Due figure antagoniste e complici, ascoltano e trasmettono, agiscono liberamente, operano in un mondo dove sono aboliti i confini e l’esito è incerto. E’ necessario agire in prima persona.
Open Source at SciLifeLab
Coverage analysis for clinical sequencing. Simple pipelines for bioinformatics. Removes adapters from your reads. De Novo Assembly Evaluation Tool. Inheritance in family studies. Summarise results across samples. Making NGS data dance!
opensource.se
Opensource.se provides reliable consulting services using open source knowledge. We work with free software such as GNU. Systems. Our consultants are a part of the growing open source community and therefore have the unique ability to create secure customized solutions based on free software. Linux is a registered trademark of Linus Torvalds.
SGI - oss.sgi.com: Open Source at SGI
Newsgroups and Mailing Lists. Open Source at SGI Overview. This is the Developer Central portal to all SGI Open Source material. Wanderers, seekers, and developers are offered this gateway to Open Source technical content and advice, libraries of downloadable software, contribution points, email lists, and links to the Open Source community. SGI Open Source Projects. OpenSUSE IA64 Project [more]. Fedora IA64 Project [more]. SpeedShop for Linux Press Release [more]. CSA 21.0 release available [more].
Cornell University School of Hotel Administration - Open Source Software Home
Skip to main content. Hotel School Open Source Software. This site provides an index to software projects maintained by the Hotel School or its employees (outside of Hotel School duties) for which source code (but, in general, not support) is made freely available to members of the Cornell community. We also maintain an active webteam blog. Where we often talk about coding issues specific to the Cornell community and beyond. You can find current code hosted on GitHub:. CUKerberos for Firefox Home.
opensource.small-improvements.com
Small Improvements - Open Source projects
Small Improvements - Open Source projects. Check out our great open source plugins! A versatile jQuery plugin for displaying beautiful tooltips. An interactive map plugin for jQuery. 2013 by Small Improvements.
