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Proda homepage - multiple alignment of protein sequences with repeats and rearrangements

ProDA is public domain software for multiple alignment of protein sequences with repeated and shuffled elements. ProDA source code can be downloaded here. Benchmarking dataset, testing scripts, and testing results can be downloaded here. ProDA should be cited as:. Phuong T.M., Do C.B., Edgar R.C., and Batzoglou S. Multiple alignment of protein sequences with repeats and rearrangements. Nucleic Acids Research. The ProDA algorithm was developed by Tu Minh Phuong.

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