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ROSIE: The Rosetta Online Server that Includes Everyone

ROSIE Rosetta server based on www.rosettacommons.org engine

http://rosie.graylab.jhu.edu/

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ROSIE: The Rosetta Online Server that Includes Everyone | rosie.graylab.jhu.edu Reviews
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ROSIE Rosetta server based on www.rosettacommons.org engine
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ROSIE: The Rosetta Online Server that Includes Everyone | rosie.graylab.jhu.edu Reviews

https://rosie.graylab.jhu.edu

ROSIE Rosetta server based on www.rosettacommons.org engine

INTERNAL PAGES

rosie.graylab.jhu.edu rosie.graylab.jhu.edu
1

[ROSIE] VIP Protocol

http://rosie.graylab.jhu.edu/vip

Welcome to ROSIE Rosetta Online Server that Includes Everyone. Please cite the following article when referring to results from our VIP server:. B Borgo and J.J. Havranek (2012) Automated selection of stabilizing mutations in designed and natural proteins , Proc. Nat. Acad. Sci. USA 109(5): 1494-1499. VIP modeling tools developed by the Jim Havranek lab in Department of Genetics at Washington University St. Louis. ROSIE is web front-end for Rosetta software suite.

2

[ROSIE] Supercharge Protocol

http://rosie.graylab.jhu.edu/supercharge

Welcome to ROSIE Rosetta Online Server that Includes Everyone. ROSIE is web front-end for Rosetta software suite. Developed by Sergey Lyskov, GrayLab at JHU.

3

rosie Documentation

http://rosie.graylab.jhu.edu/documentation

Welcome to ROSIE Rosetta Online Server that Includes Everyone. Get Started with ROSIE. Server related documentation and info. This is a list of forums for Rosetta users to discuss problems with running Rosetta and is monitored by Rosetta developers. Please see [About ROSIE]. For server related documentation and statistics. Ligand docking app documentation. Rna redesign app documentation. Symmetric docking app documentation. Make exemplar app documentation. RNA Denovo App Documentation.

4

[rosie] Queue

http://rosie.graylab.jhu.edu/queue

Welcome to ROSIE Rosetta Online Server that Includes Everyone. Waiting for HPC job(s) to finish. [560 process(es) in queue, 233 process(es) running]. Waiting for a new job to be submitted. Waiting for HPC job(s) to finish. [112 process(es) in queue, 112 process(es) running]. Waiting for HPC job(s) to finish. [112 process(es) in queue, 112 process(es) running]. Waiting for HPC job(s) to finish. [112 process(es) in queue, 112 process(es) running]. Filter by job state:. Filter by job owner:.

5

About ROSIE

http://rosie.graylab.jhu.edu/about

Welcome to ROSIE Rosetta Online Server that Includes Everyone. See more info at our About. Get Started with ROSIE. Server related documentation and info. This is a list of forums for Rosetta users to discuss problems with running Rosetta and is monitored by Rosetta developers. Latest Rosetta User Guide. Is a web front-end to the Rosetta 3.x. Is an easy-to-use web interface for selected Rosetta protocols. Framework is developed by Sergey Lyskov at GrayLab at JHU. Average waiting time in queue:.

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graylab.jhu.edu graylab.jhu.edu

Facilities in Gray Lab

http://graylab.jhu.edu/facilities.html

Welcome to the Gray Lab. System: Dell PowerEdge High-Performance Computing Cluster. Processors: 8 dual-hex-core nodes, 13 dual-quad-core nodes, and 32 quad-core nodes for a total of 328 CPUs. RAM Memory: 1-2 GB/core. Network: 1 GB Ethernet High Speed Adapter. Capable of producing 10. We host the Rosetta Commons. Cluster, used (1) to test every incremental revision of the Rosetta code and (2) to run free calculations for the academic scientific community through our ROSIE. RAM Memory: 8 GB/node.

rosettatests.graylab.jhu.edu rosettatests.graylab.jhu.edu

Facilities in Gray Lab

http://rosettatests.graylab.jhu.edu/facilities.html

Welcome to the Gray Lab. System: Dell PowerEdge High-Performance Computing Cluster. Processors: 8 dual-hex-core nodes, 13 dual-quad-core nodes, and 32 quad-core nodes for a total of 328 CPUs. RAM Memory: 1-2 GB/core. Network: 1 GB Ethernet High Speed Adapter. Capable of producing 10. We host the Rosetta Commons. Cluster, used (1) to test every incremental revision of the Rosetta code and (2) to run free calculations for the academic scientific community through our ROSIE. RAM Memory: 8 GB/node.

graylab.jhu.edu graylab.jhu.edu

Rosetta Docking Software

http://graylab.jhu.edu/docking/rosetta

Welcome to the Gray Lab. RosettaDock predicts the structure of a protein-protein complex from the individual structures of the monomer components. RosettaDock is distributed as part of the Rosetta Protein Structure Prediction and Design Suite. Rosetta is available from the RosettaCommons. Chaudhury, S. and Gray, J. J. Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles, J. Mol. Biol. 4), 1068-1087 (2008). Online. Updated 8/13/2008 graylab...

rosettacommons.org rosettacommons.org

Servers | RosettaCommons

https://www.rosettacommons.org/software/servers

The hub for Rosetta modeling software. The RosettaCommons offers many web-interface servers for the use of Rosetta, which usually allow small academic jobs for free or paid use for large or commercial projects Rosetta@cloud. Read more about Rosetta servers in the RosettaDesign blog. The Rosetta Online Server the Includes Everyone hosts several servers for combined computer power as a free resource for academic users. Protein Structure Prediction Server. Protein Sequence Design Server. Rosetta@cloud is a ...

rosettatests.graylab.jhu.edu rosettatests.graylab.jhu.edu

Rosetta Docking Software

http://rosettatests.graylab.jhu.edu/docking/rosetta

Welcome to the Gray Lab. RosettaDock predicts the structure of a protein-protein complex from the individual structures of the monomer components. RosettaDock is distributed as part of the Rosetta Protein Structure Prediction and Design Suite. Rosetta is available from the RosettaCommons. Chaudhury, S. and Gray, J. J. Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles, J. Mol. Biol. 4), 1068-1087 (2008). Online. Updated 8/13/2008 graylab...

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ROSIE: The Rosetta Online Server that Includes Everyone

Welcome to ROSIE Rosetta Online Server that Includes Everyone. See more info at our About. Get Started with ROSIE. Server related documentation and info. This is a list of forums for Rosetta users to discuss problems with running Rosetta and is monitored by Rosetta developers. Latest Rosetta User Guide. Rosetta Protocols opened for academic users:. Rosetta Protocols under beta testing (for developers only):. ROSIE is web front-end for Rosetta software suite. Developed by Sergey Lyskov, GrayLab at JHU.

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