soap.genomics.org.cn
SOAP :: Short Oligonucleotide Analysis PackageSOAP :: Short Oligonucleotide Analysis Package
http://soap.genomics.org.cn/
SOAP :: Short Oligonucleotide Analysis Package
http://soap.genomics.org.cn/
TODAY'S RATING
>1,000,000
Date Range
HIGHEST TRAFFIC ON
Monday
LOAD TIME
3.4 seconds
PAGES IN
THIS WEBSITE
15
SSL
EXTERNAL LINKS
61
SITE IP
116.6.107.48
LOAD TIME
3.365 sec
SCORE
6.2
SOAP :: Short Oligonucleotide Analysis Package | soap.genomics.org.cn Reviews
https://soap.genomics.org.cn
SOAP :: Short Oligonucleotide Analysis Package
soap.genomics.org.cn
SOAP :: Short Oligonucleotide Analysis Package
http://soap.genomics.org.cn/SOAP-HLA.html
Is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or WGS data with high accuracy. The pipeline takes the aligned BAM file as input and outputs the most reliable HLA type for each gene. The alogrithms and software in this package were developed by BGI (Hongzhi Cao, Tao Zhang). 64-bit x86-64 Intel CPU with SSE instructions. The program needs 500 MB main memory to run with data from Homo sapiens. Download SOAP-HLA from the link below.
SOAP :: Short Oligonucleotide Analysis Package
http://soap.genomics.org.cn/soapsnp.html
Is a member of the SOAP (Short Oligonucleotide Analysis Package). Uses a method based on Bayes’ theorem (the reverse probability model) to call consensus genotype by carefully considering the data quality, alignment, and recurring experimental errors. All these kinds of information was integrated into a single quality score for each base in PHRED scale to measure the accuracy of consensus calling. Currently, it supports the alignment format of SOAPaligner. Release 1.03 , 05-25-2009. SOAPsnp is a command ...
SOAP :: Short Oligonucleotide Analysis Package
http://soap.genomics.org.cn/soapdenovo.html
SOAPdenovo aims for large plant and animal genomes, although it also works well on bacteria and fungi genomes. It runs on 64-bit Linux system with a minimum of 5G physical memory. For big genomes like human, about 150 GB memory would be required. The executable program and source code are now available on SourceForge:. Other related tools( Know more. SOAPec v2.01.tar.gz, a correction tool for SOAPdenovo:. ErrorCorrection.tgz, another correction tool for SOAPdenovo:. 2) A new module named "sparse-pregraph...
SOAP:Short Oligonucleotide Alignment Program
http://soap.genomics.org.cn/soap1
Last modified at Oct 29,2008. C) mRNA tag sequencing. D) Small RNA sequencing. Please always download the new version of source code from ftp.genomics.org.cn/pub/soap/. The new version of source code:. Source code 1.11 (2008-07-18). Source code 1.03 (2008-02-20). Source code 1.01 (2007-11-24). Source code 1.0 (2007-11-10). The RAM required for the program can be roughly calculated as:. A) 64 bits RAM=L/3 (4*3 8*6)*(4 S) (4 1)*3*L/4 4*(2 24). Where L is the total length of the reference sequences; S is se...
SOAP :: Short Oligonucleotide Analysis Package
http://soap.genomics.org.cn/soap3.html
The alignment program in this package is optimized to work for multi-millions of short reads each time by running a multi-core CPU and the GPU concurrently. To exploit the parallelism of the GPU effectively, SOAP3 is using an adapted version of the 2BWT index of SOAP2 (the new index is called the GPU-2BWT). The index and algorithms were developed by the algorithms research group of the University of Hong Kong (T.W. Lam, C.M. Liu, Thomas Wong, Edward Wu and S.M. Yiu). SOAP3 consists of 3 parts:. Iii) No m...
TOTAL PAGES IN THIS WEBSITE
15
NGS 常用分析软件 | 生物日志|鸣一道
http://www.zilhua.com/2081.html
2015 年 5 月 9 日. A fast and accurate tool for mapping of short reads to reference sequences. A fast light-weighted tool that aligns short nucleotide sequences to a sequence database. An ultrafast, memory-efficient short read aligner. A very fast alignment algorithms from Illumina company. A software that builds mapping assemblies from short reads generated by the next-generation sequencing machines. A software package for aligning genomic reads against a target genome. A spliced read mapper for RNA-Seq.
Databases | Ahmed Siah, PhD
https://ahmedsiah.wordpress.com/database
Ahmed Siah, PhD. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). You are commenting using your WordPress.com account. ( Log Out. You are commenting using your Twitter account. ( Log Out. You are commenting using your Facebook account. ( Log Out. You are commenting using your Google account. ( Log Out. Notify me of new comments via email. Create a free website or blog at WordPress.com.
BioInfoRx Knowledge Base Articles - Next Generation Sequencing Software
http://bioinfo4u.org/knowledge_base/ngs_software.php
List of BioInfoRx Knowledge Base Articles. Next Generation Sequencing Software. Next Generation Sequencing Software. EagleView is an information-rich genome assembler viewer with data integration capability. EagleView can display a dozen different types of information including base qualities, machine specific trace signals, and genome feature annotations. Bayesian tool for methylation analysis (Batman) for analyzing methylated DNA immunoprecipitation (MeDIP) profiles. Findpeaks was developed to perform ...
bioinformatictools.wordpress.com
Genomic Assemblers: | Bioinformatic Tools
https://bioinformatictools.wordpress.com/2014/09/15/genomic-assemblers
Blog for bioinformatic tools and methods. Original Blog is at http:/ bioinformatictools.blogspot.in/. September 15, 2014. Here is the list of most commonly used assembler for genomic reads used. The list is extensive but by no means is complete. I will try to update as soon as I come across a new one. Help me keeping the list updated if you come across any new and interesting assembler I have missed. ABySS: http:/ www.bcgsc.ca/downloads/abyss/. SOAPdenovo: http:/ soap.genomics.org.cn/. MIRA: http:/ www&#...
bioinformatictools.wordpress.com
sanjiv856 | Bioinformatic Tools
https://bioinformatictools.wordpress.com/author/sanjiv856
Blog for bioinformatic tools and methods. Original Blog is at http:/ bioinformatictools.blogspot.in/. December 30, 2014. The WordPress.com stats helper monkeys prepared a 2014 annual report for this blog. Here’s an excerpt:. The concert hall at the Sydney Opera House holds 2,700 people. This blog was viewed about 27,000. Times in 2014. If it were a concert at Sydney Opera House, it would take about 10 sold-out performances for that many people to see it. Click here to see the complete report. Sequencing ...
Links
http://cancerevo.net/styled-7/index.html
Cancer Evolution Omics Network. Http:/ samtools.sourceforge.net. Http:/ bio-bwa.sourceforge.net. Http:/ maq.sourceforge.net. Http:/ soap.genomics.org.cn. Http:/ varscan.sourceforge.net. Http:/ compbio.bccrc.ca/software/jointsnvmix. Http:/ gmt.genome.wustl.edu/somatic-sniper/current. Http:/ www.broadinstitute.org/cancer/cga/mutect. Http:/ www.broadinstitute.org/cancer/cga/breakpointer. Http:/ www.stjuderesearch.org/site/lab/zhang. Http:/ tiger.dbs.nus.edu.sg/cnv-seq. Http:/ genome.ucsc.edu.
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers : Nature Biotechnology : Nature Research
http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2022.html
Jump to main content. Performance comparison of whole-genome sequencing platforms. Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Draft genome sequence of pigeonpea ( Cajanus cajan. An orphan legume crop of resource-poor farmers. Mark T A Donoghue. Download as PDF (1,136 KB). View interactive PDF in ReadCube. Extensive synteny between the pigeonpea and soybean genomes. Microsynteny analysis between pigeonpea and soybean genomes. The later part ind...
Welcome to Lianfeng Gu's group
http://www.bioinfor.org/html/links.php
Welcome to Lianfeng Gu'S group. Software for mapping of millions of reads to reference genomes. Maq: Mapping and Assembly with Qualities. Bowtie:an ultrafast, memory-efficient short read aligner. Software for identify splicing junction reads from short read sequences. Supersplat:the tool can identify splicing junction. RNA-MATE: A recursive mapping strategy for high-throughput RNA-sequencing data. The RNAseq Genome Annotation Assessment Project. Quality Value Guided Short Read Assembler. By wang xi et al.
The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla) : Nature Genetics : Nature Research
http://www.nature.com/ng/journal/v45/n4/full/ng.2569.html
Jump to main content. Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and…. OsLG1 regulates a closed panicle trait in domesticated rice. The draft genome of the fast-growing non-timber forest species moso bamboo ( Phyllostachys heterocycla. Download as PDF (919 KB). View interactive PDF in ReadCube. Assemblies and comparative genomics. Genome duplication in grass genomes. The calculated K. Mutations per site per year. Evolution of orthologo...
TOTAL LINKS TO THIS WEBSITE
61
お肌の悩み（ニキビなど）を解決！大人気石鹸-金井誠一熟成石鹸-
吹き出物など を抱えている方は必見です たかが石鹸、されど石鹸 一度使うとやめられません. 合成着色料 科学香料 科学発泡剤 合成保存料不使用. 合成着色料 科学香料 科学発泡剤 合成保存料不使用. 金井熟成石鹸全グレードに 合成着色料 科学香料 科学発泡剤 保存料などの添加物を一切入れておりません. 無添加 合成着色料 科学香料 科学発泡剤 合成保存料は使用していません. All Web Japan Search.
全国ソープランド情報「フロなび」
全国、西川口,曙町,福富町,堀之内,南町,川崎,横浜,吉原,千葉,埼玉,栄町,福原,中洲,小倉,すすきの,雄琴,新潟エリアの優良ソープランドをご紹介。 Http:/ soap.furonavi.com/m/. 企画製作 有限会社メディアクラフト 住所 東京都中野区中央4丁目.
札幌ソープ風俗王-/札幌から道央までのソープ風俗情報を紹介。女の子のグラビアやお店のイベント情報、ホテル情報なども掲載しています。
最大9千円割引 写真指名 無料 10分延長 無料サービス! 50分 13,000 70分 17,000 90分 21,000 = = = = = = = = = = = = = = = = = = = お得がいっぱい! プラチナメール会員募集中 ノ お得な情報をゲットできます。 割引イベントなど メールでいち早くご案内 登録かんたん 是非ご利用ください。 Http:/ www.cityheaven.net/h/sapporo hisyoclub/ = = = = = = = = = = = = = = = = = = = = =出社情報はこちらhttp:/ www.cityheaven.net/h/sapporo hisyoclub. 願望 妄想 を不可能が現実のものに 抑えきれない淫らな妄想をかなえます。 最大9千円割引 写真指名 無料 10分延長 無料サービス! 50分 13,000 70分 17,000 90分 21,000 = = = = = = = = = = = = = = = = = = = お得がいっぱい! プラチナメール会員募集中 ノ お得な情報をゲットできます。
G-language SOAP service
Keio Bioinformatics Web Service (KBWS). You are able to get and use KBWS here (tar.gz). KBWS SOAP service is now available. WSDL file is located at http:/ soap.g-language.org/kbws.wsdl.
遊戲基地 gamebase
全能單字王 - 英檢、多益、托福 - 快樂學習 輕鬆記憶. 英雄聯盟 2015 LMS區域選拔賽8月14日南台灣開戰 Garena台北. 劍靈 手機卡牌對戰RPG Blade Soul Mobile α測試即. 星海爭霸 2 美食單位 玩家將蟲族打造成可口又可愛的壽司軍團. Blizzard 透露 星海爭霸 虛空之遺 上市後考慮重回 魔獸爭霸 系列. 俠盜獵車手 5 人性測試 向百位玩家友善問好竟得各種慘死下場. 美少女 換裝 觸碰 3D動作 天衣創聖 Strike Girls iOS版. 龍戰士6 公布新登場人物 龍 第一話Web漫畫免費欣賞. 劍靈 手機卡牌對戰RPG Blade Soul Mobile α測試即. 瑯琊榜 公測明日正式啟動，新副本 黃金Boss 強勢開啟. 育駿科技取得 權傾天下 代理權 預計於八月中在台上市. 無上神兵 本週更新，魔石、美人系統再強化、新副系統 注靈 芳心 登場. Blizzard 透露 星海爭霸 虛空之遺 上市後考慮重回 魔獸爭霸 系列. 英雄聯盟 2015 LMS區域選拔賽8月14日南台灣開戰 Garena台北. X行動3 更新版本，推出 七夕，不離不棄 改版.
SOAP :: Short Oligonucleotide Analysis Package
Under Construction For Full Updates. Last Modified: May 11 2010. SOAPdenovo v2.04 (with source code). Is released ; (See Download. Is released under GNU GPL v3. (See Download. Has been in evolution from a single alignment tool to a tool package that provides full solution to next generation sequencing data analysis. Currently, it consists of a new alignment tool ( SOAPaligner/soap2. A re-sequencing consensus sequence builder ( SOAPsnp. And a GPU-accelerated alignment tool (SOAP3/GPU) are being implemented.
Grammas Soaps
If you would like an alternative to commercial soap look here. My hand made soap is created from only food grade products. The only chemical additives I might add are fragrance oils. Would it surprise you to find out that most commercial soap is actually synthetic detergents? Why fragrance oils instead of essential oils? Why not essential oils? Yes, compared to the bars of modified hydrocarbons labeled soap at your local grocery store hand made soap is expensive. But there is an old saying you get wh...
系統訊息 | 藍藻 綠藻 螺旋藻買貴了嗎?大醫生技---讓保健食品售價更公平
SOAP - Student Opera At PSU
Student Opera At PSU. SOAP Masquerade Ball 2011. Portland Opera Student Dress Rehearsal. Welcome to Student Opera At PSU. How may we cleanse you? SOAP is now on Facebook! The 2011 SOAP Black and White Masquerade Ball will be held in Hoffman Hall on February 5th from 7pm-10pm. Enjoy dancing, extravagant masks and costumes, SOAP performers, and refreshments.
