bioinfo.iric.ca
Geneviève – Plateforme de bioinformatique de l’IRIC
http://bioinfo.iric.ca/author/boucherg
I’ve started in biochemistry but it is as a bioinformatician that I’ve been having fun for several years now : whether doing data analysis and visualization in R, building interactive web interfaces in javascript or exploring machine learning in python. Good resources to learn R. July 11, 2016. Machine learning in life science. May 18, 2016. What’s the fastest? 8211; R edition. May [.]. February 12, 2016. October 14, 2015. Don’t ignore the warnings! September 3, 2015. On Working with large files.
bioinfo.iric.ca
Blog – Plateforme de bioinformatique de l’IRIC
http://bioinfo.iric.ca/blog
Fastest method to compute an AUC. August 18, 2016. Speed up random disk access. August 4, 2016. Bioinformatic in a container. July 21, 2016. Good resources to learn R. July 11, 2016. SciPy and Logistic Regressions. June 9, 2016. On Working with large files. On Is a p-value needed? Subscribe to Blog via Email. Enter your email address to subscribe to this blog and receive notifications of new posts by email. Web: http:/ bioinfo.iric.ca. Subscribe to Blog via Email.
bioinfo.iric.ca
Jean-Philippe – Plateforme de bioinformatique de l’IRIC
http://bioinfo.iric.ca/author/jpl
Originally trained in molecular biology, I quickly realized my heart lied with bioinformatics! How can anyone be presented an HMM and not fall in love? While I spend most of my days writing Python code, I must admit I am starting to enjoy my occasional dip in R. Rockin' out at the platform! Simple multiprocessing in R. March 14, 2016. Grep parameters every bioinformatician should know. November 27, 2015. Put Those CPUs to Good Use! July 12, 2015. Database Content Versioning Using SQLAlchemy.
bioinfo.iric.ca
Éric – Plateforme de bioinformatique de l’IRIC
http://bioinfo.iric.ca/author/eaudemard
This author has not yet filled in any details. So far Éric has created 8 blog entries. Fastest method to compute an AUC. August 18, 2016. Factorial and Log Factorial. Factorial: When you need to calculate n! February 22, 2016. Python] Iterators vs Generators. Iterators The process of going through [.]. September 18, 2015. Be better at programming with static program analysis. What is static program analysis? But why should I use this in practice? May 8, 2015. On Working with large files.
bioinfo.iric.ca
Patrick – Plateforme de bioinformatique de l’IRIC
http://bioinfo.iric.ca/author/gendrop
Former physicist turned structural biologist and software developer, he now manages a team of talented bioinformaticians at the platform. Racing god and master barista aside, he expertly handles the next-gen sequencing analysis service and IT infrastructure. Legend has it that he was roaming the future site of IRIC prior to its foundation. He also wrote this entire bio himself in the third person. Speed up random disk access. August 4, 2016. Standard deviation on a correlation scatter plot. April 5, 2016.
chemicalspace.wordpress.com
Life as a Contractor « Chemical Space
https://chemicalspace.wordpress.com/2011/06/01/life-as-a-contractor
Exploring the world through the eyes of a chemist. Life as a Contractor. There are some little perks for the permanent employees that I can’t get. There is a fitness center on campus and employees can get in, but I can’t. I have heard tell there are some hoops you can jump through to get a pass to get it, but I haven’t been able to figure them out yet. This is minor stuff and doesn’t really affect me much. This entry was posted in career. Preparing for the Zombie Apocalypse. June 6, 2011 at 2:42 pm.
onthelambda.com
Playing around with #rstats twitter data – On the lambda
http://www.onthelambda.com/2015/02/28/playing-around-with-rstats-twitter-data
Another blog from a data analyst – by tony fischetti. Playing around with #rstats twitter data. February 28, 2015. As a bit of weekend fun, I decided to briefly look into the #rstats twitter data that Stephen Turner. Collected and made available. Essentially, this data set contains some basic information about over 100,000 tweets that contain the hashtag "#rstats" that denotes that a tweeter is tweeting about R. Most common co-occuring hashtags. After running these commands, I get a numbered list of co-o...
onthelambda.com
magrittr – On the lambda
http://www.onthelambda.com/tag/magrittr
Another blog from a data analyst – by tony fischetti. Lessons learned in high-performance R. May 31, 2015. On this blog, I've had a long running investigation/demonstration of how to make a "embarrassingly-parallel" but computationally intractable (on commodity hardware, at least) R problem more performant by using parallel computation and Rcpp. Used the (now-deprecated in favor of 'parallel') multicore package to achieve a substantial speedup. The second post. As performant as possible). In particul...
gettinggeneticsdone.com
Getting Genetics Done: May 2014
http://www.gettinggeneticsdone.com/2014_05_01_archive.html
Getting Things Done in Genetics and Bioinformatics Research. Wednesday, May 28, 2014. Using Volcano Plots in R to Visualize Microarray and RNA-seq Results. I've been asked a few times how to make a so-called volcano plot. I've analyzed some data from GEO ( GSE52202. Here's how you can use R to create a simple volcano plot. First, download the results file here. And save it as a text file called results.txt. After reading in the data from GitHub the next section creates a basic volcano plot. A few mor...
gettinggeneticsdone.com
Getting Genetics Done: August 2015
http://www.gettinggeneticsdone.com/2015_08_01_archive.html
Getting Things Done in Genetics and Bioinformatics Research. Thursday, August 6, 2015. Compiling RMarkdown from a Helper R Script. I was looking for a way to compile an RMarkdown document and have the filename of the resulting PDF or HTML document contain the name of the input data that it processed. That is, if I compiled the. File, where in that file it did some analysis and reporting on. I’d want the resulting filename to look something like. Data001.txt.analysis.html. By default, when calling. First,...
SOCIAL ENGAGEMENT