Tuuli Lappalainen’s research group studies functional genetic variation in the human populations. We are particularly interested in regulatory variation affecting the transcriptome, as well as cellular mechanisms underlying genetic associations to disease. We integrate computational analysis of genomic and transcriptomic data to population genetic and experimental analysis. We are part of the New York Genome…
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Lappalainen Lab | Functional Genomics @ NYGC | tllab.org Reviews
https://tllab.org
Tuuli Lappalainen’s research group studies functional genetic variation in the human populations. We are particularly interested in regulatory variation affecting the transcriptome, as well as cellular mechanisms underlying genetic associations to disease. We integrate computational analysis of genomic and transcriptomic data to population genetic and experimental analysis. We are part of the New York Genome…
tllab.org
Blog | Lappalainen Lab | Functional Genomics @ NYGC
http://tllab.org/blog
Functional Genomics @ NYGC. The sound of a gene breaking. May 18, 2015. Equal contribution; corresponding authors. If you listened to your cells very carefully, would you be able to hear when a gene breaks? In a new paper in Science, we show that this is, in a way, possible: by analysis of huge RNA-sequencing data sets, we can detect cellular effects of protein-truncating variants in the genome. Trending: rare variants in human disease. In 2013, and the new GTEx project. Getting rid of the nonsense.
Jobs | Lappalainen Lab
http://tllab.org/jobs
Functional Genomics @ NYGC. We are keen to work with talented graduate students via the Department of Systems Biology at Columbia University. Enrolled in the C2B2 Graduate Program, or the Integrated Program in Cellular, Molecular, and Biomedical Studies Program. Please contact Tuuli for inquiries. We are not actively recruiting postdocs at the moment. The New York Genome Center has many other open positions. Informal inquiries of open positions are very welcome: tlappalainen@nygenome.org . 01/20/2015: Po...
Team | Lappalainen Lab
http://tllab.org/people
Functional Genomics @ NYGC. Principal Investigator : Tuuli Lappalainen. Senior Staff Scientist in Molecular Biology : Ana Vasileva. Postdoc : Stephane Castel. Postdoc : Pejman Mohammadi. Postdoc : Sarah Kim. PhD Student : Margot Brandt. Associate Scientist I : Aaron Wolman. Executive Assistant : Erica Bertisch. Visiting Student: Alejandra Cervera. Tuuli Lappalainen, PhD. Tuuli Lappalainen is a Junior Investigator and Core Member at the New York Genome Center. In addition to her work in genomics, Tuuli is...
Publications | Lappalainen Lab
http://tllab.org/publications
Functional Genomics @ NYGC. Lab members in bold. Corresponding author. * Equal contribution. 2015) Functional genomics bridges the gap between quantitative genetics and molecular biology. Levy-Moonshine A, Mohammadi P, Banks E, Lappalainen T. 2015) . Tools and best practices for data processing in allelic expression analysis. T*#, MacArthur DG#* (2015) Effect of predicted protein-truncating genetic variants on the human transcriptome. Panousis N, Gutierrez-Arcelus M, Dermitzakis ET#, Lappalainen T. 2013)...
Data & Software | Lappalainen Lab
http://tllab.org/data-software
Functional Genomics @ NYGC. The GEUVADIS RNA-seq data. The data access information is available in the Geuvadis web site. In short, all the data is available open access in ArrayExpress,. Being the core accession where most users will find the data they need. The Geuvadis Browser is here. With easy visualization and download options. Authorizer : Author and affiliations list formatting for papers. Allelic Expression based on local alignment. In the Rivas et al. paper. In Science, imprinting. 03/06/2015: ...
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RNA Matters Lecture Series – Computational Medicine Center
https://cm.jefferson.edu/rna-matters-lecture-series
RNA Matters Lecture Series. Precision Medicine – One day event. Press Coverage of Our Work. RNA Matters Lecture Series. RNA Matters Lecture Series. Thursday June 10, 2015. George A. Calin, MD, PhD. Professor, Departments of Experimental Therapeutics & Leukemia Co-Director, The RNA Interference and Non-Coding RNA Center The University of Texas MD Anderson Cancer Center Houston, Texas. About Chomsky, DNA Patterns, Non-Coding RNAs and Cancer Patients. Monday November 17, 2014. Carol J. Bult, PhD. Systems Bi...
Seminar Speaker Schedule 2016-2017 |
http://ggsb.uchicago.edu/student-resources/seminar-test
FACULTY & RESEARCH. Human Genetics and Disease. Curriculum & Timeline – First Year. Curriculum & Timeline – Second Year. Finances & Housing FAQ. Recent GGSB Student Publications. Journal Club Schedule 2016-2017. Seminar Speaker Schedule 2016-2017. Seminar Speaker Schedule 2016-2017. 2016 2017 Seminar Speaker Schedule. Tuesdays, 4:00 pm. Cummings Life Science Center, Room 101 920 E. 58th Street. Visualization and evolution of transcriptional enhancers in animal development". January 10, 2017. March 7, 2017.
UW Genome Sciences: GS Seminars
http://www.gs.washington.edu/news/seminars.htm
Each year, the UW Department of Genome Sciences brings the world’s leading researchers from a broad spectrum of scientific areas to campus to discuss latest advances in genetics, genomics, proteomics, computational research and related emerging tools and technologies. All Genome Sciences Seminars take place at 3:30 on Wednesdays in Foege Auditorium unless otherwise noted. The new GS Seminars mailing list is: gs-seminars [ a. Please follow this link for a listing of past seminars. Monday, August 29. Walte...
UCSC Genome Browser: News Archives
http://hgwdev-sugnet.cse.ucsc.edu/goldenPath/newsarch.html
An error occurred while processing this directive]. Mar 6, 2017 New Genome Browsers available for Golden Snub-Nosed Monkey and Turkey! A Genome Browser is now available for the Golden Snub-Nosed Monkey (. Assembly released in October 2014 by Novogene. For more information and statistics about this assembly, see the NCBI assembly record for Rrox v1. There are 196,797 contigs and 135,512 scaffolds in this assembly with a total size of 2,899,552,139 bases. Page Please observe the conditions for use. Page fo...
Join us | pickrell lab
https://jkplab.org/join-us
STATISTICAL AND POPULATION GENOMICS @NYGC. We are located at the New York Genome Center, a rapidly growing basic and clinical research institute in lower Manhattan. Our lab has close ties with other groups in the New York area, particularly those run by Tuuli Lappalainen. At NYGC, Yaniv Erlich. At NYGC, Molly Przeworksi. At Columbia, and Guy Sella. At Columbia. See here. For our lab meeting/journal club schedule. We accept students through the doctoral program at the Department of Biological Sciences.
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Fostering continued interest in the University of Southern California in our community. Assn of Trojan Leagues. Joseph P. Allen. Past Presidents Honored at the TLLA Annual Meeting. The 2013 Benefit honoring the new John McKay Center was a Great Success! First Board Meeting of 2013. Joint Board Meeting June 2012. First General Meeting of 2012. USC School of Cinematic Arts Tour. 2011-2012 Trojan League of Los Angeles site by Bistro Studios.
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Lappalainen Lab | Functional Genomics @ NYGC
Functional Genomics @ NYGC. Tuuli Lappalainen’s research group studies functional genetic variation in the human populations. We are particularly interested in regulatory variation affecting the transcriptome, as well as cellular mechanisms underlying genetic associations to disease. We integrate computational analysis of genomic and transcriptomic data to population genetic and experimental analysis. We are part of the New York Genome Center. 05/07/2015: The GTEx consortium papers are out! 04/25/2014: N...
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Blog 1 | Just another WordPress.com weblog
Just another WordPress.com weblog. Cloud Atlas and the End. November 9, 2008. Has good points and not so good. Some chapter though they fit didn’t seem to go with Mitchell’s message such as the Robert Frobisher letters chapters and the Cavendish chapters. The letters had a lot of information but it didn’t use the society or world as a whole but more information on Robert Frobisher and his individual life. These two stories have nothing to do with society or the world as a whole as the other chapters do.
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