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Home | tRNADB-CE : tRNA gene database curated manually by experts***
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Home | tRNADB-CE : tRNA gene database curated manually by experts | trna.ie.niigata-u.ac.jp Reviews
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trna.ie.niigata-u.ac.jp
Frequency of nucleotide in each position
http://trna.ie.niigata-u.ac.jp/trnadb/Stat/trna_stat.html
Frequency of nucleotide in each position on tRNA cloverleaf secondary structure. Based on tRNADB-CE ver. 9.0, Nov., 2015).
How to Use
http://trna.ie.niigata-u.ac.jp/trnadb/HowToUse.html
How to use tRNADB-CE. 1 Data List: How to use Phylum/Species List. 1 Data List: How to use tRNA gene List. 1 Data List: How to use the detail information of tRNA gene. 1 Data List: How to use Anticodon table. 2 Keyword Search: How to use Advanced Search. 3 Sequence Search: How to use Advanced Pattern Search. 5 Identical Sequence Group. 6 Identical Sequence Groups found in an environmental sample. How to use tRNADB-CE. 1 Data List: How to use Phylum/Species List. 1 Data List: How to use tRNA gene List.
The workflow of searching for tRNA genes
http://trna.ie.niigata-u.ac.jp/trnadb/method.html
The workflow of searching for tRNA genes. In order to enhance the completeness and accuracy of prediction, three computer programs, tRNAscan-SE. Were used in combination since their algorithms are partially different and render somewhat different results. In addiotn, by performing TFAM program. Reported by Randeau et al. Nature, 2005) are also noted.
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Modomics - Links
http://modomics.genesilico.pl/links
RNAMods tRNA database - a database has been discontinued. 3D Ribosomal Modification Maps database. TRNAdb 2009 Compilation of tRNA sequences and tRNA genes. Sprinzl database (replaced by tRNAdb 2009). The Genomic tRNA Database. TRNADB-CE - manually curated tRNA genes. RNABase - a database has been permanently discontinued. Rfam database of RNA families. European rRNA database - outdated and no longer updated since 2007. Auxiliary databases and tools. PDB protein structure database.
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Transfer RNA databases
Please make your choice from our tRNA databases:. For the tRNAdb containing more than 12.000 tRNA genes from 577 species and 623 tRNA sequences from 104 species. Mitochondrial transfer RNA database. For the new mito. TRNAdb containing more than 30.000 metazoan mitochondrial tRNA genes from more than 1,500 species.
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Home | tRNADB-CE : tRNA gene database curated manually by experts
TRNA gene database curated manually by experts. Niigata Univ.,. Nagahama Inst. of Bio-Sci. and Tech.,. Keio Univ.,. Yamagata Univ.,. A computer program widely used for tRNA gene searches, in combination with ARAGORN. About the workflow of searching for tRNA genes in this database. Takashi Abe, Hachiro Inokuchi, Yuko Yamada, Akira Muto, Yuki Iwasaki, Toshimichi Ikemura. TRNADB-CE: tRNA gene database well-timed in the era of big sequence data". Takashi Abe, Toshimichi Ikemura, Junichi Sugahara, Akio Kanai,...
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