bioinf.uni-leipzig.de
Bioinformatics Leipzig - Web services
http://www.bioinf.uni-leipzig.de/webServices.html
Peter F. Stadler. Web services produced by our group. MITOS - Automated Annotation of Metazoan Mitochondrial Genomes. MITOS implements a pipeline for the automated annotation of Metazoan mitochondrial genomes. The method is based on an automatic consistent re-annotation of protein coding genes and non-coding RNAs using BLASTX and co-variance models. Http:/ mitos.bioinf.uni-leipzig.de. TRNAdb - Transfer RNA Database. Http:/ trnadb.bioinf.uni-leipzig.de. Http:/ dario.bioinf.uni-leipzig.de/.
modomics.genesilico.pl
Modomics - Links
http://modomics.genesilico.pl/links
RNAMods tRNA database - a database has been discontinued. 3D Ribosomal Modification Maps database. TRNAdb 2009 Compilation of tRNA sequences and tRNA genes. Sprinzl database (replaced by tRNAdb 2009). The Genomic tRNA Database. TRNADB-CE - manually curated tRNA genes. RNABase - a database has been permanently discontinued. Rfam database of RNA families. European rRNA database - outdated and no longer updated since 2007. Auxiliary databases and tools. PDB protein structure database.
houlaboratory.org
Hou Laboratory
http://www.houlaboratory.org/links
Dept of Biochemistry and Molecular biology. Thomas Jefferson University homepage. Pedro's Molecular Biology page. Stem ExPASy Proteomics Server. J Craig Venter Institute. Aminoacyl-tRNA Synthetases Databank Sequences of most known tRNA synthetases, plus additional information on tRNA. Pubmed for Medline, BLAST and Genbank searches. Genomic tRNA database tRNAscan-SE analysis of complete genomes. TRNA Gene DataBase Curated by Experts. Mammalian mitochondrial tRNA database. Protein Data bank (at RCSB).
mods.rna.albany.edu
Related RNA Databases | The RNA Modification Database
http://mods.rna.albany.edu/Links/Related-RNA-Databases
The RNA Modification Database. Description of the Entries. The SSU rRNA modification database. A compilation of posttranscriptional modification sites in RNA from the small ribosomal subunit. Includes identities of modified nucleosides if known, and provision for comparison of modifications in aligned sequences from Bacteria, Archaea and Eukarya. TRNAdb: Compilation of tRNA sequences and tRNA genes. AMBER force field parameters. Protein Data Bank with 3D structures of a number of modified nucleosides.
bioinformatik.uni-leipzig.de
Bioinformatics Leipzig - Web services
http://www.bioinformatik.uni-leipzig.de/webServices.html
Peter F. Stadler. Web services produced by our group. MITOS - Automated Annotation of Metazoan Mitochondrial Genomes. MITOS implements a pipeline for the automated annotation of Metazoan mitochondrial genomes. The method is based on an automatic consistent re-annotation of protein coding genes and non-coding RNAs using BLASTX and co-variance models. Http:/ mitos.bioinf.uni-leipzig.de. TRNAdb - Transfer RNA Database. Http:/ trnadb.bioinf.uni-leipzig.de. Http:/ dario.bioinf.uni-leipzig.de/.
bierinformatik.de
Bioinformatics Leipzig - Web services
http://www.bierinformatik.de/webServices.html
Peter F. Stadler. Web services produced by our group. MITOS - Automated Annotation of Metazoan Mitochondrial Genomes. MITOS implements a pipeline for the automated annotation of Metazoan mitochondrial genomes. The method is based on an automatic consistent re-annotation of protein coding genes and non-coding RNAs using BLASTX and co-variance models. Http:/ mitos.bioinf.uni-leipzig.de. TRNAdb - Transfer RNA Database. Http:/ trnadb.bioinf.uni-leipzig.de. Http:/ dario.bioinf.uni-leipzig.de/.