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ZebrafishMine: Home

Search ZebrafishMine using names, symbols, identifiers and keywords for genes, proteins, fish and more. (ie: pax2a). Enter a list of identifiers, symbols or names. Eg gsc,goosecoid,pax2a,A0A181. ZebrafishMine is a tool to help you customize searches of Zebrafish related biological data including genes, proteins, fish, and reagents. GO term Anatomical Structure. Sanger ZMP (sa) alleles. Sequence alterations in publication. Perl, Python, Ruby and &. We provide client libraries in the following languages:.

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ZebrafishMine: Home | zebrafishmine.org Reviews

https://zebrafishmine.org

Search ZebrafishMine using names, symbols, identifiers and keywords for genes, proteins, fish and more. (ie: pax2a). Enter a list of identifiers, symbols or names. Eg gsc,goosecoid,pax2a,A0A181. ZebrafishMine is a tool to help you customize searches of Zebrafish related biological data including genes, proteins, fish, and reagents. GO term Anatomical Structure. Sanger ZMP (sa) alleles. Sequence alterations in publication. Perl, Python, Ruby and &. We provide client libraries in the following languages:.

INTERNAL PAGES

zebrafishmine.org zebrafishmine.org
1

ZebrafishMine: Lists

http://www.zebrafishmine.org/bag.do

Upload list of identifiers. Create a new list. Select the type of list to create and either enter in a list of identifiers or upload identifiers from a file. A search will be performed for all the identifiers in your list. Separate identifiers by a comma. Qualify any identifiers that contain whitespace with double quotes like so: "even skipped". Simple Sequence Length Variation. Click to see an example). Or Upload identifiers from a .txt file. Current page: - - /bag.do. At University of Oregon.

2

ZebrafishMine: Home

http://www.zebrafishmine.org/api.do?subtab=perl

Search ZebrafishMine using names, symbols, identifiers and keywords for genes, proteins, fish and more. (ie: pax2a). Enter a list of identifiers, symbols or names. Eg esr1, pparg, esr2a, esr2b, sdr42e1, star, ENSDARG00000063438, apoa1b, apoa1a, npc2, dhcr7, ZDB-GENE-061013-742, cyp11a2, s2p. ZebrafishMine is a tool to help you customize searches of Zebrafish related biological data including genes, proteins, fish, and reagents. Sequence alterations in publication. Sanger ZMP (sa) alleles. Smith RN, et al...

3

ZebrafishMine: Template queries page

http://www.zebrafishmine.org/templates.do

Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Enter a new List name:. You are not logged in. Log in. To mark items as favourites. GO term - Genes. List all zebrafish genes annotated to a specific Gene Ontology term.

4

ZebrafishMine: Template queries page

http://www.zebrafishmine.org/templates.do?filter=Genomics

Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Enter a new List name:. You are not logged in. Log in. To mark items as favourites. GO term - Genes. List all zebrafish genes annotated to a specific Gene Ontology term.

5

ZebrafishMine: Custom query

http://www.zebrafishmine.org/customQuery.do

Advanced users can use a flexible query interface to construct their own data mining queries. The QueryBuilder lets you view the data model, apply constraints and select output. You can also export queries to share them with others. Import query from XML. Login to view saved queries. Select a Data Type to Begin a Query. Click on a class name for a description or double click on a class name to create a new query starting at that class. Simple Sequence Length Variation. Import query from XML.

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LINKS TO THIS WEBSITE

flymine.org flymine.org

FlyMine: Home

http://www.flymine.org/flymine/mymine.do

An integrated database for Drosophila. Search FlyMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. HIPPO DROME, glycolysis,. Eg CG9151, FBgn0000099, CG3629, TfIIB, Mad, CG1775, CG2262, TWIST DROME, tinman, runt, E2f, CG8817, FBgn0010433, CG9786, CG1034, ftz, FBgn0024250, FBgn0001251, tll, CG1374, CG33473, ato, so, CG16738, tramtrack, CG2328, gt. FlyMine integrates many types of data for. Take a video tour. Anopheles Gambiae Orthologues GO terms of these orthologues.

flymine.org flymine.org

FlyMine: Template queries page

http://www.flymine.org/flymine/templates.do

An integrated database for Drosophila. Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Enter a new List name:. You are not logged in. Log in. To mark items as favourites. Gene - GO terms. Chromosome - All genes. Show G...

flymine.org flymine.org

FlyMine: Home

http://www.flymine.org/flymine/api.do

An integrated database for Drosophila. Search FlyMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. HIPPO DROME, glycolysis,. Eg CG9151, FBgn0000099, CG3629, TfIIB, Mad, CG1775, CG2262, TWIST DROME, tinman, runt, E2f, CG8817, FBgn0010433, CG9786, CG1034, ftz, FBgn0024250, FBgn0001251, tll, CG1374, CG33473, ato, so, CG16738, tramtrack, CG2328, gt. FlyMine integrates many types of data for. Take a video tour. Anopheles Gambiae Orthologues GO terms of these orthologues.

medicmine.jcvi.org medicmine.jcvi.org

MedicMine: Lists

http://medicmine.jcvi.org/medicmine/bag.do?subtab=upload

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Upload list of identifiers. Create a new list. Select the type of list to create and either enter in a list of identifiers or upload identifiers from a file. A search will be performed for all the identifiers in your list. Separate identifiers by a comma. Qualify any identifiers that contain whitespace with double quotes like so: "even skipped". M truncatula f. tricycla. M truncatula var. truncatula. Click to see an example). InterMine is funded by the.

medicmine.jcvi.org medicmine.jcvi.org

MedicMine: Template queries page

http://medicmine.jcvi.org/medicmine/templates.do

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Enter a new List name:. You are not logged in. Log in. To mark items as favourites. Keyword - GO terms and Genes. Smith RN, et al...

humanmine.org humanmine.org

HumanMine: Data Categories

http://www.humanmine.org/humanmine/dataCategories.do

An integrated database of Homo sapiens. This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window. Current page: - - /humanmine/dataCategories.do. Have you tried our InterMine Android app? Smith RN, et al. InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics. 2012 Dec 1;28(23):3163-5. InterMine is funded by the Wellcome Trust.

humanmine.org humanmine.org

HumanMine: Home

http://www.humanmine.org/humanmine/begin.do

An integrated database of Homo sapiens. Search HumanMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. PPARG HUMAN, glycolysis, ACTN2). Eg PPARG, FTO, 3949, LEP, 946, MC3R, 9607, LPL, LDLR, P55916, 335, GLUT4, Notch1, SLC27A1. HumanMine integrates many types of data for. You can run flexible queries, export results and analyse lists of data. Human ] Orthologue Gene(s). Genes by GO term. All Genes Transcripts Exons. Gene HPO Phenotype parent term - Genes. Genes by GO term.

medicmine.jcvi.org medicmine.jcvi.org

MedicMine: Home

http://medicmine.jcvi.org/medicmine

Updated on Sep-16-2016 (v1.2.0, Mt4.0v2. Search MedicMine. Enter names. For genes, proteins, pathways, ontology terms, authors, etc. (e.g. Medtr2g036650, plasma membrane, sucrose synthase). Eg Medtr1g088775, Medtr2g008430, Medtr2g042330, Medtr3g084500, Medtr4g092620, Medtr5g022700, Medtr6g033260, Medtr7g072350, Medtr7g075090, Medtr7g083920, Medtr7g100345, Medtr8g028145, Medtr8g036020, Medtr8g036035, Medtr8g036040, Medtr8g036050, Medtr8g083210, Medtr8g105860. MedicMine integrates many types of data for.

ratmine.mcw.edu ratmine.mcw.edu

RatMine: Lists

http://ratmine.mcw.edu/ratmine/bag.do?subtab=upload

Running InterMine 1.6.6. Upload list of identifiers. Create a new list. Select the type of list to create and either enter in a list of identifiers or upload identifiers from a file. A search will be performed for all the identifiers in your list. Separate identifiers by a comma. Qualify any identifiers that contain whitespace with double quotes like so: "even skipped". Simple Sequence Length Variation. Click to see an example). Or Upload identifiers from a .txt file. InterMine is funded by the.

synbiomine.org synbiomine.org

SynBioMine: Home

http://www.synbiomine.org/synbiomine/api.do

Data mining for Synthetic Biology. Search SynBioMine. Enter names. For genes, proteins, domains, ontology terms, authors, etc. (e.g. CHEY BACSU, two-component, phosphorelay regulation). Eg ArcA, CheW, EG11609, LacZ, EG11140, DnaX, EG12006, EG12385, CynR, EG12007, b4112, JW1871. SynBioMine integrates many types of data related to synthetic biology. And more. You can run flexible queries, export results and analyse lists of data. Please go to the forum. For news and discussion, the Github issues list.

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ZebrafishMine: Home

Search ZebrafishMine using names, symbols, identifiers and keywords for genes, proteins, fish and more. (ie: pax2a). Enter a list of identifiers, symbols or names. Eg gsc,goosecoid,pax2a,A0A181. ZebrafishMine is a tool to help you customize searches of Zebrafish related biological data including genes, proteins, fish, and reagents. GO term Anatomical Structure. Sanger ZMP (sa) alleles. Sequence alterations in publication. Perl, Python, Ruby and &. We provide client libraries in the following languages:.

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