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BioclipseBlogA blog dedicated to Bioclipse - a workbench for life science
http://bioclipse.blogspot.com/
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http://bioclipse.blogspot.com/
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BioclipseBlog | bioclipse.blogspot.com Reviews
https://bioclipse.blogspot.com
A blog dedicated to Bioclipse - a workbench for life science
bioclipse.blogspot.com
BioclipseBlog: Bioclipse 2.4.0.RC1 is out
http://bioclipse.blogspot.com/2010/06/bioclipse-240rc1-is-out.html
A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.4.0.RC1 is out. A new release candidate is out and can be found at the usual site for release candidates:. Http:/ pele.farmbio.uu.se/bioclipse-devel/. Among the main news are:. We are now using Java 1.6. Eclipse 3.5.2. And of course bug fixes and probably a lot of other stuff which I don't know about. If you download and try the release candidate of course you already know that we love to get bug reports in our Bugzilla.
BioclipseBlog: Bioclipse 2.4.0.RC3 is here
http://bioclipse.blogspot.com/2010/07/bioclipse-240rc3-is-here.html
A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.4.0.RC3 is here. A new release candidate is out and can be found at the usual site for release candidates:. Http:/ pele.farmbio.uu.se/bioclipse-devel/. I have a good feeling about this one. I think Bioclipse 2.4 is really close now. And as usual, if you download and try the release candidate of course you already know that we love to get bug reports in our Bugzilla. Subscribe to: Post Comments (Atom). Bioclipse 2.4 released.
BioclipseBlog: Bioclipse 2.0 released
http://bioclipse.blogspot.com/2009/07/biocipse-20-released.html
A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.0 released. On behalf of all Bioclipse. A Molecules Table capable of reading large files. And a powerful backbone in cheminformatics provided by the Chemistry Development Kit (CDK). Screenshot of Bioclipse showing editing of a chemical structure using the new JChemPaint editor. Bioclipse is a Rich Client. Framework, Bioclipse delivers a state-of-the-art plugin architecture which makes it possible to extend it in any direction.
BioclipseBlog: Bioclipse meets OpenTox
http://bioclipse.blogspot.com/2011/03/bioclipse-meets-opentox.html
A blog dedicated to Bioclipse - a workbench for life science. Barry Hardy wrote a very nice post about when he encountered the Tamboti Tree. A very toxic tree, and his experience when using Bioclipse. To assess its toxicity. Read the full article and watch the movie here: http:/ barryhardy.blogs.com/theferryman/2011/03/the-tamboti-tree-use-case-bioclipse-meets-opentox.html. Subscribe to: Post Comments (Atom). Presenting at Society of Toxicology 2011. Web seminar on Bioclipse.
BioclipseBlog: Bioclipse 2.6 released
http://bioclipse.blogspot.com/2012/12/bioclipse-26-released.html
A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.6 released. The Bioclipse team is proud to announce the release of Bioclipse. Version 2.6. The release contains new Decision Support. Models (such as for ChEMBL and Chemspider. With e.g. improved aromaticity detection, and Bioclipse-R. Including R-models for DS. Improved core stability based on Eclipse 3.8 and support for Java 1.7, new installation processes for Windows and Mac OS X, and numerous bug fixes. A getting started guide.
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kemistry desktop environment: Alexandr interviewed on Strigi/Chemistry GSoC project
http://kemistry-desktop.blogspot.com/2007/10/alexandr-interviewed-on-strigichemistry.html
Saturday, October 13, 2007. Alexandr interviewed on Strigi/Chemistry GSoC project. Gave an interview with KDE's Dot. On his Google Summer of Code project on the use of Strigi to search chemical documents on the desktop. Subscribe to: Post Comments (Atom). Assistant professor at Maastricht University, studying biology at an unsupervised but atomic level. Open science is my main hobby resulting in participation in, among many others, Bioclipse, CDK and Wikipathways. . 7542-0286. Posts on G are personal.
kemistry desktop environment: March 2007
http://kemistry-desktop.blogspot.com/2007_03_01_archive.html
Thursday, March 08, 2007. Chemical KDE GSoC Project Ideas. Will participate again in the Google Summer of Code. At this moment two project ideas are written up related to chemistry:. A 3D Molecular Editor. Strigi: chemistry and biology support. The second is my personal favorite, and I have worked on this topic. In the past myself. See also Carsten's post on this. The only thing I really miss in the full list of ideas. Is the idea of completing a Greasemonkey plugin for Konqueror. Links to this post.
kemistry desktop environment: June 2008
http://kemistry-desktop.blogspot.com/2008_06_01_archive.html
Saturday, June 07, 2008. Fish: my next generation sh? In a nice write up of functionality. Nice tip! I have been using BASH for a long time now, before which I used csh, IIRC. Oi, that was on the old Solaris days. Anyway, default settings are quite nice, but one thing I don't like so much is the abbreviated pwd. In the prompt. At least, not for the full prompt. It would suite me best of the last two or three directories were not abbreviated, but could not find an option for that. Instead of prompt pwd.
chem-bla-ics: Progress with CMLRSS plugin for Bioclipse
http://chem-bla-ics.blogspot.com/2006/03/progress-with-cmlrss-plugin-for.html
Monday, March 06, 2006. Progress with CMLRSS plugin for Bioclipse. With quite some help from Ola. I made good progress with the CMLRSS plugin. The current result looks like:. A problem in the transition from Jumbo 5.0 to 5.1 is causing a problem so that it does not show a 3D model or 2D diagram, but that will follow soon. Monday, March 06, 2006. Subscribe to: Post Comments (Atom). 7542-0286. Posts on G are personal. View my complete profile. Two Apache Jena SPARQL query performance observations. Doing se...
kemistry desktop environment: October 2007
http://kemistry-desktop.blogspot.com/2007_10_01_archive.html
Saturday, October 13, 2007. Alexandr interviewed on Strigi/Chemistry GSoC project. Gave an interview with KDE's Dot. On his Google Summer of Code project on the use of Strigi to search chemical documents on the desktop. Links to this post. Subscribe to: Posts (Atom). Assistant professor at Maastricht University, studying biology at an unsupervised but atomic level. Open science is my main hobby resulting in participation in, among many others, Bioclipse, CDK and Wikipathways. . View my complete profile.
kemistry desktop environment: November 2008
http://kemistry-desktop.blogspot.com/2008_11_01_archive.html
Friday, November 14, 2008. Unsolved problems with maximized Kubuntu Intrepid windows. After quite happily having upgraded to Intrepid. On two machines (a laptop and a desktop), I started upgrading a second laptop. By now, I had apt-p2p. Installed on my first laptop, and with the help of Cameron hacked apt-p2p. To allow my laptop use the apt-p2p installation of my already migrated laptop. The download went rather smoothly. Anyway, that's not important to my problem. I removed my .kde. Problem could be fix...
Documentation | Bioclipse
http://bioclipse.net/documentation
Getting started with Bioclipse. From latest Bioclipse release). O Spjuth, M. Eklund, and J.E.S. Wikberg. An Information System for Proteochemometrics. CDK News, Vol. 2/2, 2005. O Spjuth, T. Helmus, E. Willighagen, S. Kuhn, M. Eklund, J. Wagener, P. Murray-Rust, C. Steinbeck, and J.E.S. Wikberg. Bioclipse: an open source workbench for chemo- and bioinformatics. O Spjuth. Bioclipse - integration of data and software in the life sciences. Uppsala University, 2009. ISBN 978-91-554-7633-5. O Spjuth, J. Al...
kemistry desktop environment: February 2008
http://kemistry-desktop.blogspot.com/2008_02_01_archive.html
Saturday, February 02, 2008. Synchroning KDE settings; Plasma updates. First of all, thanx to all who gave replied to my previous blog item KDE 4.0.0: no Yukuake for Kubuntu? I got my desktop machine run KDE4 now, with. Being able to lock the screen. Riddel wrote a tool to synchronize KDE settings between machines. It's actually amazing that in the era where KDE is able to have a central architecture for 'personal information' ( Akonadi. BTW, does it support both KDE3 and KDE4? Links to this post. View m...
A Chemical RCP Adventure: RDF-powered QSAR wizard: SPARQL end points providing wizard content
http://chemicalrcp.blogspot.com/2010/03/rdf-powered-qsar-wizard-sparql-end.html
A Chemical RCP Adventure. Monday, March 15, 2010. RDF-powered QSAR wizard: SPARQL end points providing wizard content. From my blog, one of the things I am working on is to push RDF functionality in Bioclipse. As I believe it to be the missing link between molecular chemometrics. And literature, databases, and other non-numerical information sources. As part of the submission for the SWAT4LS. Special issue in the new Journal of Biomedical Semantics. Hacked up a cool wizard that sets up a new QSAR Project.
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Parkerad hos Loopia
Det här domännamnet är köpt och parkerat av en kund till oss. Om du vill ta reda på den publika ägar- och kontaktinformationen kan du använda tjänsten LoopiaWHOIS. Vid registrering av domännamn hos oss kan du lägga till domäntjänsten LoopiaDNS och få tillgång till nedanstående funktioner och mycket mer. Detta kostar endast 99 kr/år oavsett antal domännamn. För mer information om LoopiaDNS, vänligen besök vår hemsida på adressen www.loopia.se/loopiadns. Vad är väl en domän utan en hemsida?
Parkerad hos Loopia
Det här domännamnet är köpt och parkerat av en kund till oss. Om du vill ta reda på den publika ägar- och kontaktinformationen kan du använda tjänsten LoopiaWHOIS. Vid registrering av domännamn hos oss kan du lägga till domäntjänsten LoopiaDNS och få tillgång till nedanstående funktioner och mycket mer. Detta kostar endast 99 kr/år oavsett antal domännamn. För mer information om LoopiaDNS, vänligen besök vår hemsida på adressen www.loopia.se/loopiadns. Vad är väl en domän utan en hemsida?
Parkerad hos Loopia
Det här domännamnet är köpt och parkerat av en kund till oss. Om du vill ta reda på den publika ägar- och kontaktinformationen kan du använda tjänsten LoopiaWHOIS. Vid registrering av domännamn hos oss kan du lägga till domäntjänsten LoopiaDNS och få tillgång till nedanstående funktioner och mycket mer. Detta kostar endast 99 kr/år oavsett antal domännamn. För mer information om LoopiaDNS, vänligen besök vår hemsida på adressen www.loopia.se/loopiadns. Vad är väl en domän utan en hemsida?
Bioclipse
For info on Bioclipse press here. Genetta Soft is a developer of Bioclipse and provides consultancy on Bioclipse. Contact info@genettasoft.com for further information. Genetta Soft is a developer of innovative software for chemo- and bioinformatics. Contact info@genettasoft.com for further information. Genetta Soft provides custom tailored software for chemo- and bioinformatics under the Bioclipse platform. Contact info@genettasoft.com for further information.
BioclipseBlog
A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.6 released. The Bioclipse team is proud to announce the release of Bioclipse. Version 2.6. The release contains new Decision Support. Models (such as for ChEMBL and Chemspider. With e.g. improved aromaticity detection, and Bioclipse-R. Including R-models for DS. Improved core stability based on Eclipse 3.8 and support for Java 1.7, new installation processes for Windows and Mac OS X, and numerous bug fixes. A getting started guide.
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Bioclipse
Bioclipse 2.6.2 released! Nov 4, 2016:. Bioclipse 2.6.2 is now released and available for download from SourceForge. The release contains bugfixes and compatibility improvements. The original 2.6 release brought new features and bug fixes in cheminformatics and drug discovery, including improved QSAR functionality, site-of-metabolism prediction, semantic web functionality, browsing of large compound collections and editing of chemical structures. Click the arrow for a quick tour of Bioclipses features.
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