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Bioclipse

Bioclipse 2.6.2 released! Nov 4, 2016:. Bioclipse 2.6.2 is now released and available for download from SourceForge. The release contains bugfixes and compatibility improvements. The original 2.6 release brought new features and bug fixes in cheminformatics and drug discovery, including improved QSAR functionality, site-of-metabolism prediction, semantic web functionality, browsing of large compound collections and editing of chemical structures. Click the arrow for a quick tour of Bioclipses features.

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Bioclipse 2.6.2 released! Nov 4, 2016:. Bioclipse 2.6.2 is now released and available for download from SourceForge. The release contains bugfixes and compatibility improvements. The original 2.6 release brought new features and bug fixes in cheminformatics and drug discovery, including improved QSAR functionality, site-of-metabolism prediction, semantic web functionality, browsing of large compound collections and editing of chemical structures. Click the arrow for a quick tour of Bioclipses features.
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Bioclipse | bioclipse.net Reviews

https://bioclipse.net

Bioclipse 2.6.2 released! Nov 4, 2016:. Bioclipse 2.6.2 is now released and available for download from SourceForge. The release contains bugfixes and compatibility improvements. The original 2.6 release brought new features and bug fixes in cheminformatics and drug discovery, including improved QSAR functionality, site-of-metabolism prediction, semantic web functionality, browsing of large compound collections and editing of chemical structures. Click the arrow for a quick tour of Bioclipses features.

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wiki.bioclipse.net wiki.bioclipse.net

Bioclipse

This wiki mainly contains resources for development. Bioclipse 2.6.2 beta is released. Bioclipse 2.6.0. Bioclipse 2.6 has reached Beta status. (see Bioclipse 2.6 Release. Bioclipse 2.4 has been released (see announcement. Read about the latest Bioclipse news on the Bioclipse home page. And the Planet Bioclipse. Get in touch with the Community. Where is Bioclipse developed? Sweden), and others. Please see Bioclipse Developers. Is the official Bioclipse Project Blog, http:/ planet.bioclipse.net/. The main ...

INTERNAL PAGES

bioclipse.net bioclipse.net
1

MetaPrint2D in Bioclipse | Bioclipse

http://bioclipse.net/metaprint2d

MetaPrint2D is a tool to predict metabolic sites in chemical structures based on historic metabolic data, described by circular fingerprints. If you use MetaPrint2D in Bioclipse, please cite:. Lars Carlsson, Ola Spjuth, Samuel Adams, Robert Glenn, Scott Boyer. Use of Historic Metabolic Biotransformation Data as a Means of Anticipating Metabolic Sites Using MetaPrint2D and Bioclipse. Open an SDF in the Molecules table and click the toolbar. For details and source code of the MetaPrint2D implementation.

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Uppsala University | Bioclipse

http://bioclipse.net/uppsala-university

Uppsala University is also one of the largest seats of higher education in Sweden with 23,000 students and doctoral students, and a teaching staff of 4,000. More information about Uppsala University you find by clicking here. Chem-bla-ics : Comparing sets of identifiers: the Bioclipse implementation. MetaPrint2D in Bioclipse (Page). Decision Support introductory screencast (Screencast). Bioclipse 2.6 released (News article). InChI OSGI bundles (Page).

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InChI OSGI bundles | Bioclipse

http://bioclipse.net/inchi-osgi

IUPAC Chemical Identifier (InChI). Is such a standardized identifier for chemical structures. The Bioclipse project maintains OSGi. Bundles for InChI, making it easily available in any software application supporting the OSGi module system. It wraps the jni-inchi. In OSGi bundles and publishes them on a p2 site. The P2 site for the jni-inchi OSGi bundels is: http:/ pele.farmbio.uu.se/bioclipse/jni-inchi/. Chem-bla-ics : Comparing sets of identifiers: the Bioclipse implementation. InChI OSGI bundles (Page).

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Ola Spjuth | Bioclipse

http://bioclipse.net/users/ola-spjuth

6 years 37 weeks. Chem-bla-ics : Comparing sets of identifiers: the Bioclipse implementation. MetaPrint2D in Bioclipse (Page). Decision Support introductory screencast (Screencast). Bioclipse 2.6 released (News article). InChI OSGI bundles (Page).

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Bioclipse 2.6 released | Bioclipse

http://bioclipse.net/news/bioclipse-26-released

Bioclipse 2.6 released. Published by Ola Spjuth. Sat, 2012-12-22 23:27. The Bioclipse team is proud to announce the release of. Version 2.6. The release contains new. Models (such as for. With e.g. improved aromaticity detection, and. Improved core stability based on Eclipse 3.8 and support for Java 1.7, new installation processes for Windows and Mac OS X, and numerous bug fixes. Bioclipse 2.6 is available for Mac OS X, Linux, and Windows and can be downloaded from Sourceforge. A getting started guide.

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bioclipse.blogspot.com bioclipse.blogspot.com

BioclipseBlog: Web seminar on Bioclipse

http://bioclipse.blogspot.com/2011/03/web-seminar-on-bioclipse.html

A blog dedicated to Bioclipse - a workbench for life science. Web seminar on Bioclipse. Ola Spjuth of the Bioclipse project will give a web seminar on Mar 29th 16:00 GMT entitled: In-Silico Prediction of Drug Safety and Metabolites Using Bioclipse. The seminar is free of charge but requires registration. Subscribe to: Post Comments (Atom). Presenting at Society of Toxicology 2011. Web seminar on Bioclipse.

bioclipse.blogspot.com bioclipse.blogspot.com

BioclipseBlog: Bioclipse 2.0 released

http://bioclipse.blogspot.com/2009/07/biocipse-20-released.html

A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.0 released. On behalf of all Bioclipse. A Molecules Table capable of reading large files. And a powerful backbone in cheminformatics provided by the Chemistry Development Kit (CDK). Screenshot of Bioclipse showing editing of a chemical structure using the new JChemPaint editor. Bioclipse is a Rich Client. Framework, Bioclipse delivers a state-of-the-art plugin architecture which makes it possible to extend it in any direction.

bioclipse.blogspot.com bioclipse.blogspot.com

BioclipseBlog: April 2012

http://bioclipse.blogspot.com/2012_04_01_archive.html

A blog dedicated to Bioclipse - a workbench for life science. Chemical decision support with Chemspider and ChEMBL-RDF. Is a system where users can draw or import chemical structures, execute multiple predictions or database lookups, and visually interpret results. This was previously demonstrated for chemical liability assessment. And for running OpenTox predictions. In the recent days I have implemented a module for adding a. SimilaritySearch complemented by ChEMBL lookup via the. For aiding me in this...

bioclipse.blogspot.com bioclipse.blogspot.com

BioclipseBlog: Postdoc position in predictive toxicology at Uppsala University

http://bioclipse.blogspot.com/2012/04/postdoc-position-in-predictive.html

A blog dedicated to Bioclipse - a workbench for life science. Postdoc position in predictive toxicology at Uppsala University. Postdoc position in cheminformatics, bioinformatics, or computer science - applications in predictive toxicology. We have an open postdoc position in the group of Pharmaceutical Bioinformatics at the Department of Pharmaceutical Biosciences, Uppsala University, Sweden. Deadline for application: May 9th , 2012. Subscribe to: Post Comments (Atom).

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Eclipse | Samuel's Tech Blog

http://saml.rilspace.com/tags/eclipse

Samuel's Tech Blog. Log in / Create account. How to force update of the layout of a Eclipse JFace Wizard? Thu, 2013-09-05 16:36 by Samuel Lampa. Add this to it's onEnterPage() method:. For more info, see this StackOverflow question:. Why does an SWT Composite sometimes require a call to resize() to layout correctly? HPC Client Screencast: Experimental Job Config Wizard. Fri, 2011-08-19 14:39 by Samuel Lampa. The Wizard obviously has quite some rough edges still. My current TODO is as follows:. In the wiz...

progz-jchem.blogspot.com progz-jchem.blogspot.com

Dutch summer of code - jchempaint: progz-jchempaint

http://progz-jchem.blogspot.com/2007/07/progz-jchempaint.html

Dutch summer of code - jchempaint. This blog is about the project I'm working on for the Dutch summer of code (Programmeerzomer), organised by the Holland Open Software Platform. Tuesday, July 24, 2007. This new blog is about the project I'm working on for the Dutch summer of code, called 'Programmeerzomer'. Organised by the Holland Open Software Platform. The project I'm working on is called JChemPaint. An editor for 2D molecular structures and part of the The Chemistry Development Kit (CDK).

kemistry-desktop.blogspot.com kemistry-desktop.blogspot.com

kemistry desktop environment: KDE 4.0.0: no Yukuake for Kubuntu?

http://kemistry-desktop.blogspot.com/2008/01/kde-400-no-yukuake-for-kubuntu.html

Saturday, January 19, 2008. KDE 40.0: no Yukuake for Kubuntu? Last week I installed the Kubuntu gutsy packages. For KDE 4.0.0. And was delighted about the result (see the visual guide. Surely, I have some things I got so much used too, which do not seem 4.0.0 material:. Taskbar at the top of the desktop. Option to resize the taskbar. Searching files with I tagged/rated with Dolphin/Nepomuk. Strigi still does not have PDF support (and I'm not that fluent in C ). The set in the Kubuntu debs seems limited.

kemistry-desktop.blogspot.com kemistry-desktop.blogspot.com

kemistry desktop environment: Alexandr interviewed on Strigi/Chemistry GSoC project

http://kemistry-desktop.blogspot.com/2007/10/alexandr-interviewed-on-strigichemistry.html

Saturday, October 13, 2007. Alexandr interviewed on Strigi/Chemistry GSoC project. Gave an interview with KDE's Dot. On his Google Summer of Code project on the use of Strigi to search chemical documents on the desktop. Subscribe to: Post Comments (Atom). Assistant professor at Maastricht University, studying biology at an unsupervised but atomic level. Open science is my main hobby resulting in participation in, among many others, Bioclipse, CDK and Wikipathways. . 7542-0286. Posts on G are personal.

kemistry-desktop.blogspot.com kemistry-desktop.blogspot.com

kemistry desktop environment: Friend-of-a-Friend (FOAF) support in Strigi

http://kemistry-desktop.blogspot.com/2007/11/friend-of-friend-foaf-support-in-strigi.html

Friday, November 16, 2007. Friend-of-a-Friend (FOAF) support in Strigi. Last week I have been hacking on a Strigi. Files Now, one will not expect FOAF files on ones desktop soon. unless, you start indexing your Konqueror. History. I have not seen that feature yet, but not overly difficult to implement for a skilled Konqueror developer (just use the dbus interface for Strigi). However, HTML files may have this line in the head element:. Rel='meta' title='FOAF' type='application/rdf xml'/. Assistant profes...

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Bioclipse

For info on Bioclipse press here. Genetta Soft is a developer of Bioclipse and provides consultancy on Bioclipse. Contact info@genettasoft.com for further information. Genetta Soft is a developer of innovative software for chemo- and bioinformatics. Contact info@genettasoft.com for further information. Genetta Soft provides custom tailored software for chemo- and bioinformatics under the Bioclipse platform. Contact info@genettasoft.com for further information.

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BioclipseBlog

A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.6 released. The Bioclipse team is proud to announce the release of Bioclipse. Version 2.6. The release contains new Decision Support. Models (such as for ChEMBL and Chemspider. With e.g. improved aromaticity detection, and Bioclipse-R. Including R-models for DS. Improved core stability based on Eclipse 3.8 and support for Java 1.7, new installation processes for Windows and Mac OS X, and numerous bug fixes. A getting started guide.

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Bioclipse 2.6.2 released! Nov 4, 2016:. Bioclipse 2.6.2 is now released and available for download from SourceForge. The release contains bugfixes and compatibility improvements. The original 2.6 release brought new features and bug fixes in cheminformatics and drug discovery, including improved QSAR functionality, site-of-metabolism prediction, semantic web functionality, browsing of large compound collections and editing of chemical structures. Click the arrow for a quick tour of Bioclipses features.

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Domain and Cheap Web Hosting by One.com. Bioclipse.org is hosted by One.com. Web hosting and domain by One.com. Affordable web hosting and domain plans available at One.com. Build your own website with Web Editor or choose a 1-click blog installation. Whatever you choose, One.com. Is dedicated to our customers' satisfaction with 24/7 chat support.

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Dalys Periodic Table of the Bioclocks, BioclockScience.com Home

Is an excellent introduction and summary of bioclock science. A Facebook page will be up and running in the near future. This website is dedicated to the study of bioclocks and how to study any species. It also provides the reader with a number of resources to further research up-to-date biology and psychology. The book Bioclock Farm. Contains new and exciting theories and ideas about modern science including the Study Guide to the Periodic Table of the Bioclocks. Powered by Network Solutions.

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BioClock - Fertility & Pregnancy Calculator

Function ereg() is deprecated in /home/myobgyn/public html/bioclock.ca/index.php. BioClock is the most powerful, yet simple and easy to use, fertility and pregnancy calculator. Designed by an ObGyn for women themselves, it is powerful and accurate enough to be the choice for many obstetricians and midwives. You can quickly and easily determine the precise gestational age of your baby at any time during your pregnancy, or determine how far along you will be at a certain date. This is accomplished thro...

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Bioclock Systems - Fingerprint Attendance Solutions

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