bioinf.uni-freiburg.de

Bioinformatics Group Freiburg

Head of the Group. Prof Dr. Rolf Backofen. 49 (0) 761 / 203 - 7461. 49 (0) 761 / 203 - 7462. 49 (0) 761 / 203 - 7460. 49 (0) 761 / 203 - 7462. Department of Computer Science. Location map and description. March 2017] Im Rahmen der Schüler-Ingenieur-Akademie (SIA). Führen wir interessierte Schüerinnen und Schüler in unserem Workshop 'Bioinformatik - finde einen Gendefekt'. In allgemeine Tätigkeiten und Aufgaben der Bioinformatikforschung ein. In Freiburg in Freiburg on 9.-10.3.2017! If you are interested.

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Bioinformatics Group Freiburg | bioinf.uni-freiburg.de Reviews

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Head of the Group. Prof Dr. Rolf Backofen. 49 (0) 761 / 203 - 7461. 49 (0) 761 / 203 - 7462. 49 (0) 761 / 203 - 7460. 49 (0) 761 / 203 - 7462. Department of Computer Science. Location map and description. March 2017] Im Rahmen der Schüler-Ingenieur-Akademie (SIA). Führen wir interessierte Schüerinnen und Schüler in unserem Workshop 'Bioinformatik - finde einen Gendefekt'. In allgemeine Tätigkeiten und Aufgaben der Bioinformatikforschung ein. In Freiburg in Freiburg on 9.-10.3.2017! If you are interested.

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1 bioinformatics

2 team

3 research

4 teaching

5 publications

6 software/server

7 freiburg galaxy

8 events

9 intern

10 disclaimer

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Bioinformatics Group Freiburg | bioinf.uni-freiburg.de Reviews

https://bioinf.uni-freiburg.de

Head of the Group. Prof Dr. Rolf Backofen. 49 (0) 761 / 203 - 7461. 49 (0) 761 / 203 - 7462. 49 (0) 761 / 203 - 7460. 49 (0) 761 / 203 - 7462. Department of Computer Science. Location map and description. March 2017] Im Rahmen der Schüler-Ingenieur-Akademie (SIA). Führen wir interessierte Schüerinnen und Schüler in unserem Workshop 'Bioinformatik - finde einen Gendefekt'. In allgemeine Tätigkeiten und Aufgaben der Bioinformatikforschung ein. In Freiburg in Freiburg on 9.-10.3.2017! If you are interested.

INTERNAL PAGES

bioinf.uni-freiburg.de

1

Prof. Dr. Rolf Backofen

http://www.bioinf.uni-freiburg.de/~backofen

Personal page of Prof. Dr. Rolf Backofen. Prof Dr. Rolf Backofen. Prof Dr. Rolf Backofen. Lehrstuhl für Bioinformatik. Institut für Informatik. Georges-Koehler-Allee, Geb 106. D-79110 Freiburg, Germany. 49) 761 203 7460 (Secretary). 49) 761 203 7461. 49) 761 203 7462. Building 106, room 02-007. For a full list see publications. Of our group home page. 3 (BBerger - D. J. Kleitman - P. Erdös) or alternatively (K. Zhang - J. O. Shallit - P. Erdös).

2

Bioinformatics Group Freiburg - LatPack

http://www.bioinf.uni-freiburg.de/Software/LatPack

LatPack - Folding studies for arbitrary lattice protein models. LatPack is a collection of tools related to the folding simulations of lattice-protein models with arbitrary energy function. It is therefore embedded in our research field Simplified Protein Models. Global folding simulation using Pull-moves or Pivot-moves. Fitting of a real PDB protein structure onto a lattice. Conversion between structure representations (including PDB format). Counting the number of possible non-symmetric structures.

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rna.informatik.uni-freiburg.de

Email Center

http://rna.informatik.uni-freiburg.de/EmailNotification.jsp

In order to send us an Email please fill the following form. About this web server.

rna.informatik.uni-freiburg.de

ExpaRNA - Exact Matching

http://rna.informatik.uni-freiburg.de/ExpaRNA

ExpaRNA - Exact Matching. ExpaRNA - Exact Matching. For articles describing the tool refer to the reference section below. Please cite us. When using our tools. For more information check the help page. Try ExpaRNA with these examples. Sequence Input in FASTA Format:. Minimal size of included substructures:. Maximal number of used substructures:. Just EPM size (default). EPM 2 = prefer larger patterns. Write ExpaRNA result as input for LocARNA with anchor constraints:. Write all EPMs into file:.

rna.informatik.uni-freiburg.de

CopraRNA - sRNA Targeting

http://rna.informatik.uni-freiburg.de/CopraRNA

CopraRNA - sRNA Targeting. CopraRNA - sRNA Targeting. For articles describing the tool refer to the reference section below. Please cite us. When using our tools. For more information check the help page. Try CopraRNA with this example. 5 ChiX sequences ( 2h) ( input. Minimal rel. cluster size:. Uploading sequences - please wait. When using CopraRNA please cite :. CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains. Nucleic Acids Research, 2014, 42 (W1), W119-W123.

rna.informatik.uni-freiburg.de

CRISPRmap - CRISPR Conservation

http://rna.informatik.uni-freiburg.de/CRISPRmap

CRISPRmap - CRISPR Conservation. CRISPRmap - CRISPR Conservation. CRISPRmap provides a quick and detailed insight into repeat conservation and diversity of both bacterial and archaeal systems. It comprises the largest dataset of CRISPRs to date and enables comprehensive independent clustering analyses to determine conserved sequence families, potential structure motifs for endoribonucleases, and evolutionary relationships. When using our tools. For more information check the help page. Nucleic Acids Rese...

rna.informatik.uni-freiburg.de

Contact and Information

http://rna.informatik.uni-freiburg.de/About.jsp

Department of Computer Science. Contact and bug report: please use our Email Center. Technical details for server version 4.2.3. The following software was used for developing this web server. Package links and non-commercial use licences last validated 27/02/2012. About this web server.

rna.informatik.uni-freiburg.de

Publications

http://rna.informatik.uni-freiburg.de/Publications.jsp

When using the Freiburg RNA Tools please. Cite the according publications. From the lists provided for each individual tool. Provide the following web URL. Http:/ rna.informatik.uni-freiburg.de. With version (4.2.3) along with your citation, to enable an easy access of the Freiburg RNA Tools. A general list of publications. By the Freiburg Bioinformatics Group is available here. If you have questions concerning publications or citation, please contact us. Tool specific lists of publications. IntaRNA: eff...

rna.informatik.uni-freiburg.de

Frequently Asked Questions

http://rna.informatik.uni-freiburg.de/Faq.jsp

How long are computed results available and stored? What publications to cite when using the server? Why do I get a warning saying that my browser has incompatibility issues with the web server? Who to contact if I have further trouble or encounter problems not listed here? I have created a cool new RNA Bioinformatics tool, is it possible to integrate it into the web server? How are RNA structures modelled? Why are mRNAs assumed to fold locally and not globally? When are sRNAs homologous? How does the mR...

rna.informatik.uni-freiburg.de

MARNA - Structure Alignment

http://rna.informatik.uni-freiburg.de/MARNA

For each sequence only." /. MARNA - Structure Alignment. MARNA - Structure Alignment. MARNA is not maintained anymore since 2005. For the task of multiple sequence-structure RNA alignment the more advanced tool LocARNA. Is superseding MARNA (check fixed structure input in LocARNA help page). For articles describing the tool refer to the reference section below. Please cite us. When using our tools. For more information check the help page. Try MARNA with this example. TRNA alignment ( input. Cameron Smit...

gecode.org

GECODE projects

http://www.gecode.org/projects.html

We would like to encourage you to contribute to Gecode. Currently, the following projects contribute to or make use of the Gecode library:. Département d'ingénierie informatique. Université catholique de Louvain. Contributes variables and propagators for finite graphs and maps. University of Orléans. Qecode is a solver for quantified constraint satisfaction problems with restricted quantification built on top of Gecode. Eberhard Karls Universität Tübingen. Albert Ludwigs University Freiburg.

rna.informatik.uni-freiburg.de

Help

http://rna.informatik.uni-freiburg.de/Help.jsp

For help with a particular tool, please select a link below. For general information and answers to frequently asked questions, please go to the FAQ. If you want to contact us please visit the email. Help for individual tools. Please select one of the following links to get tool-specific help information:. About this web server.

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BackofenLab

OTHER SITES

bioinf.sce.carleton.ca

James Green - Webservers

Welcome to the research web server of the Green lab. Cell BE Workshop 15-16 May 2008, Carleton University. VMware Image Download (FC7, SDK3):. Webservers hosted on this machine:. A method of predicting post-translational sumoylation sites on proteins via parallel cascade identification. Green, J.R., Dmochowski G.M., Golshani A., "Prediction of Protein Sumoylation Sites Via Parallel Cascade Identification", CMBEC06. Vancouver, 1-3 June 2006. A method of predicting ATP- and GTP-binding sites on proteins.

bioinf.shenwei.me

Wei Shen's Bioinformatic tools

Wei Shens Bioinformatic tools. MicroRNA Prediction Using a Fixed-Order Markov Model Based on the Secondary Structure Pattern. Fast Multiple Covariance Detector. Go/Linux,OS X,Windows. A cross-platform and ultrafast toolkit for FASTA/Q file manipulation. Go/Linux,OS X,Windows. A cross-platform and Efficient NCBI Taxonomy Toolkit. Go/Linux,OS X,Windows. A fast cross-platform NCBI taxonomy data querying tool, with cmd client and REST API server for both local and remote server. Go/Linux,OS X,Windows.

bioinf.spbau.ru

Algorithmic Biology Lab | St. Petersburg Academic University of the Russian Academy of Sciences

Skip to main content. St Petersburg Academic University of the Russian Academy of Sciences. SPAdes 3.11 genome assembler. A q uality assessment tool for genome assemblies. Algorithmic Biology Lab was founded at St. Petersburg Academic University of the Russian Academy of Sciences. Led by Dr. Pavel Pevzner. And Dr. Max Alekseyev. And supported by the Russian Ministry of Education and Science ( Decree 220. Currently, we're working on the following projects:. Novel approach to sequencing and genome assembly.

bioinf.stepik.org

Онлайн-магистратура по биоинформатике

Начало программы осень 2017 года. Для поступления необходимо пройти программу по Анализу данных. И дополнительные курсы по биологии. Все подробности о магистратуре появятся зимой 2016-2017. Задайте свой вопрос на bioinf@stepik.org. Please correct e-mail address. Name Wrong. Correct please. Please correct phone number. Please enter letter, number or punctuation symbols. Мы будем держать вас в курсе.

bioinf.ucd.ie

Des Higgins laboratory

Belfield, Dublin 4. 00353) 1 716 6833. 00353) 1 716 6701. Webmaster: Alessandro Guida Valid XHTML.

bioinf.uni-freiburg.de

Bioinformatics Group Freiburg

Head of the Group. Prof Dr. Rolf Backofen. 49 (0) 761 / 203 - 7461. 49 (0) 761 / 203 - 7462. 49 (0) 761 / 203 - 7460. 49 (0) 761 / 203 - 7462. Department of Computer Science. Location map and description. March 2017] Im Rahmen der Schüler-Ingenieur-Akademie (SIA). Führen wir interessierte Schüerinnen und Schüler in unserem Workshop 'Bioinformatik - finde einen Gendefekt'. In allgemeine Tätigkeiten und Aufgaben der Bioinformatikforschung ein. In Freiburg in Freiburg on 9.-10.3.2017! If you are interested.

bioinf.uni-greifswald.de

Bioinformatics Greifswald

Institute for Mathematics and Computer Science. Welcome to the Bioinformatics Web Server. This is the web server of the Bioinformatics Group at the Institute for Mathematics and Computer Science at University of Greifswald. Navigating from this page, you find:. Information about our group (and where to find us),. Bioinformatics web services (e.g. AUGUSTUS),. Bioinformatics tools and data for download,. Publications of our group, and. BioTechniques reports about BRAKER1. Tel: 49 (0)3834 420 - 46 24.

bioinf.uni-kiel.de

Bioinformatics Network

Faculty of Mathematics and Natural Sciences. Prof Dr. Tal Dagan. Prof Dr. Andre Franke. Institute of Clinical Molecular Biology. The bioinformatics network aims to promote bioinformatics research at Kiel University and its partner institutes by supplying a framework for an inter-disciplinary scientific exchange and an inter-faculty education program. Seminars are also announced by email to the bioinf mailing list. Please subscribe to this list here. 13 1 2017 (Friday) 15:00. Beate Slaby, GEOMAR Kiel.

bioinf.uni-leipzig.de

Bioinformatics Leipzig

Peter F. Stadler. Member of the Bompfünewerer Consortium. Do you know the Vienna RNA Package. And comparing RNA Secondary Structures? Haskell in Leipzig 2017. October 26 to October 28, 2017 at HTWK Leipzig, Germany. Haskell in Leipzig 2017 brings together Haskell developers, Haskell researchers, Haskell enthusiasts, and Haskell beginners to listen to talks, take part in tutorials, join in interesting conversations, and hack together. Master Thesis topics offered in Evolutionary Biology.

bioinf.uni-sb.de

Lehrstuhl für Bioinformatik - Saarbrücken |

Skip to main content. Prof Dr. Hans-Peter Lenhof. Lara Schneider, M. Sc. Tim Kehl, M. Sc. Welcome to the Chair for Bioinformatics. Monday, November 13, 2017 - 15:08. Monday, November 13, 2017 - 00:00. 039;Future X Healthcare Scientific Excellence Award' für DrugTargetInspector. Tuesday, January 19, 2016 - 10:35. Wednesday, April 24, 2013 - 15:17. Wednesday, February 29, 2012 - 18:02. MiRTrail Webservice for analyzing miRNA - mRNA interactions now online. Nucleic Acids Research,. Nucleic Acids Research,.

bioinf.wehi.edu.au

WEHI Bioinformatic Resources Page

Welcome to the Walter and Eliza Hall Institute website for local bioinformatic resources. Supplementary materials for published articles. All seminars for this year.