bioit.ibms.sinica.edu.tw

genepipe.ncgm.sinica.edu.tw

GenePipe Info

http://genepipe.ncgm.sinica.edu.tw/info.do

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to NCBI 36.3. Annotation Release 105 (Human). DNA Sequence 37 version (hs ref GRCh37.p13 chr*.fa.gz). B141 ContigInfo.bcp.gz. B141 SNPContigLoc.bcp.gz. Seq gene.md.gz. Seq gene.q.gz. Blast-2.2.26-x64-linux.tar.gz. GO (go 201404-assocdb-data.gz). Sift50.2.tar.gz. Uniprot sprot.dat.gz. Allele frequencies (Han Chinese in Taiwan). Affy 10K (Mapping10K Xba142.na32.annot.csv.zip). ALLchr11.phase1 release v3&...

ncbi36.genepipe.ncgm.sinica.edu.tw

GenePipe! - About us

http://ncbi36.genepipe.ncgm.sinica.edu.tw/us.do

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to Annotation Release 105. About Bioinformatics RD Team. We are a research and development team in Biomedical IT Core. 李中饋 (Chung-Kuei(CK), Li). 陳建谷 (Chien Ku Chen). Institute of Biomedical Sciences, Academia Sinica. Phone: 886-2-2782-5258 ext 4323 FAX: 886-2-2782-4066. Email: genepipe@ibms.sinica.edu.tw. Last update time:2012-10-26 AM11:21 CST 0800.

hipipe.ncgm.sinica.edu.tw

HiPipe analysis pipeline

http://hipipe.ncgm.sinica.edu.tw/introduction.jsp

High Performance Pipelines for NGS Data Analysis. HiPipe is a project to democratize genomic research by extending our optimized internal high performance NGS analysis pipelines to external research community. HiPipe has the following features we believe can help democratizing genomic research and benefit the community:. By providing intuitive and friendly web GUI, researchers with minimum IT or bioinformatics knowledge can easily perform NGS analysis tasks on HiPipe. Fast analysis on large genomes.

genepipe.ncgm.sinica.edu.tw

Sequence downloading tool for SNP

http://genepipe.ncgm.sinica.edu.tw/seqtool

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Go to QualiSeq v1.9. SNP flanking sequence download for Sequenom. One or more SNP rsIDs. One or more Variations. Max 10,000 items). Max 10,000 items). According to the provided SNPs. Replace them by "N"). Exclude Deletion Insertion Polymorphism (DIP) type SNPs. Institute of Biomedical Sciences, Academia Sinica. Phone: 886-2-2782-5258 ext 4323 FAX: 886-2-2782-4066. Email: genepipe@ibms.sinica.edu.tw.

genepipe.ncgm.sinica.edu.tw

Affyrmation

http://genepipe.ncgm.sinica.edu.tw/mkr

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Affyrmation : Affymetrix SNP Chip Marker Affirmation. Chen, Y.H., Tsai, M.F. and Yao, A. (2006) Affyrmation: Online Real-time Affirmation and Annotation for Affymetrix SNP Information, JOURNAL OF GENETICS AND MOLECULAR BIOLOGY PDF. Max Markers : 10000. Institute of Biomedical Sciences, Academia Sinica. Phone: 886-2-2782-5258 ext 4323 FAX: 886-2-2782-4066. Email: genepipe@ibms.sinica.edu.tw.

genepipe.ncgm.sinica.edu.tw

VarioWatch

http://genepipe.ncgm.sinica.edu.tw/variowatch

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Annotation Release 105 / dbSNP 141. Switch to NCBI 36.3. A high performance online pipeline with graphical user interface for NGS data analysis. Phenotype data from COSMIC is now incorporated into MegaQuery. Phenotype data from ClinVar is now incorporated into MegaQuery. Update NCBI database to annotation release 105. MegaQuery Download ( 1000 SNVs). Two SNPs (From SNP1 to SNP2). Maximum Variations : 1000.

hipipe.ncgm.sinica.edu.tw

HiPipe analysis pipeline

http://hipipe.ncgm.sinica.edu.tw/info.jsp

High Performance Pipelines for NGS Data Analysis. Transcriptome (Dec. 2013). 12 Gbp * 2 (Paired Samples). Micro RNA (Dec. 2013). 3 TB of storage space is reserved for each task. Files of a task will be removed when any of the following conditions is met:. The space used by a task exceeds the 3 TB limit. The space used by a task is longer than 1 month. The total storage space used reaches 90% of full capacity. THE HiPipe IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, UNLESS OTHERWISE STATED.

hipipe.ncgm.sinica.edu.tw

HiPipe analysis pipeline

http://hipipe.ncgm.sinica.edu.tw/index.jsp

High Performance Pipelines for NGS Data Analysis. Haplotype-based DNA Variant Detection Analysis and new function of project data sharing are now supported by HiPipe Profrssional. RNA Variant Detection Analysis is now available in HiPipe Profrssional. A new version of HiPipe supporting multiple-sample analysis and data management is open for beta testing. Whole Genome and Exome Variant Detection. Pipelining raw sequences into BWA. For mapping and then into GATK. Pipelining raw sequences into TopHat.