genepipe.ncgm.sinica.edu.tw

GenePipe : Bioinformatics Pipeline for IBMS Genetic Research

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to NCBI 36.3. We launch a new high performance online pipeline with graphical user interface for NGS data analysis. Providing Large-Scale and Comprehensive Annotations on Human Genomic Variants in the Next Generation Sequencing Era. Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes. Suppl 12):S10 doi:10.1186/1471-2105-9-S12-S10 Full Text. Robust Functional SNP Prioritization Tool.

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GenePipe : Bioinformatics Pipeline for IBMS Genetic Research | genepipe.ncgm.sinica.edu.tw Reviews

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A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to NCBI 36.3. We launch a new high performance online pipeline with graphical user interface for NGS data analysis. Providing Large-Scale and Comprehensive Annotations on Human Genomic Variants in the Next Generation Sequencing Era. Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes. Suppl 12):S10 doi:10.1186/1471-2105-9-S12-S10 Full Text. Robust Functional SNP Prioritization Tool.

<META> KEYWORDS

1 history pages

2 history

3 db info

4 blog

5 about us

6 variowatch

7 primerz

8 qualiseq

9 affyrmation

10 seqtool

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GenePipe : Bioinformatics Pipeline for IBMS Genetic Research | genepipe.ncgm.sinica.edu.tw Reviews

https://genepipe.ncgm.sinica.edu.tw

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to NCBI 36.3. We launch a new high performance online pipeline with graphical user interface for NGS data analysis. Providing Large-Scale and Comprehensive Annotations on Human Genomic Variants in the Next Generation Sequencing Era. Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes. Suppl 12):S10 doi:10.1186/1471-2105-9-S12-S10 Full Text. Robust Functional SNP Prioritization Tool.

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ncbi36.genepipe.ncgm.sinica.edu.tw

GenePipe : Bioinformatics Pipeline for IBMS Genetic Research

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to Annotation Release 105. Providing Large-Scale and Comprehensive Annotations on Human Genomic Variants in the Next Generation Sequencing Era. FANS: Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes. Suppl 12):S10 doi:10.1186/1471-2105-9-S12-S10 Full Text. VisualSNP : Robust Functional SNP Prioritization Tool. Streamlining Primer Design for Genes and SNPs. All of the sub-project i...

INTERNAL PAGES

genepipe.ncgm.sinica.edu.tw

1

Sequence downloading tool for SNP

http://genepipe.ncgm.sinica.edu.tw/seqtool

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Go to QualiSeq v1.9. SNP flanking sequence download for Sequenom. One or more SNP rsIDs. One or more Variations. Max 10,000 items). Max 10,000 items). According to the provided SNPs. Replace them by "N"). Exclude Deletion Insertion Polymorphism (DIP) type SNPs. Institute of Biomedical Sciences, Academia Sinica. Phone: 886-2-2782-5258 ext 4323 FAX: 886-2-2782-4066. Email: genepipe@ibms.sinica.edu.tw.

2

Affyrmation

http://genepipe.ncgm.sinica.edu.tw/mkr

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Affyrmation : Affymetrix SNP Chip Marker Affirmation. Chen, Y.H., Tsai, M.F. and Yao, A. (2006) Affyrmation: Online Real-time Affirmation and Annotation for Affymetrix SNP Information, JOURNAL OF GENETICS AND MOLECULAR BIOLOGY PDF. Max Markers : 10000. Institute of Biomedical Sciences, Academia Sinica. Phone: 886-2-2782-5258 ext 4323 FAX: 886-2-2782-4066. Email: genepipe@ibms.sinica.edu.tw.

3

VarioWatch

http://genepipe.ncgm.sinica.edu.tw/variowatch

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Annotation Release 105 / dbSNP 141. Switch to NCBI 36.3. A high performance online pipeline with graphical user interface for NGS data analysis. Phenotype data from COSMIC is now incorporated into MegaQuery. Phenotype data from ClinVar is now incorporated into MegaQuery. Update NCBI database to annotation release 105. MegaQuery Download ( 1000 SNVs). Two SNPs (From SNP1 to SNP2). Maximum Variations : 1000.

4

GenePipe Info

http://genepipe.ncgm.sinica.edu.tw/info.do

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to NCBI 36.3. Annotation Release 105 (Human). DNA Sequence 37 version (hs ref GRCh37.p13 chr*.fa.gz). B141 ContigInfo.bcp.gz. B141 SNPContigLoc.bcp.gz. Seq gene.md.gz. Seq gene.q.gz. Blast-2.2.26-x64-linux.tar.gz. GO (go 201404-assocdb-data.gz). Sift50.2.tar.gz. Uniprot sprot.dat.gz. Allele frequencies (Han Chinese in Taiwan). Affy 10K (Mapping10K Xba142.na32.annot.csv.zip). ALLchr11.phase1 release v3&...

5

GenePipe! - About us

http://genepipe.ncgm.sinica.edu.tw/us.do

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to NCBI 36.3. About Bioinformatics RD Team. We are a research and development team in Biomedical IT Core. 李中饋 (Chung-Kuei(CK), Li). 陳建谷 (Chien Ku Chen). Institute of Biomedical Sciences, Academia Sinica. Phone: 886-2-2782-5258 ext 4323 FAX: 886-2-2782-4066. Email: genepipe@ibms.sinica.edu.tw. Last update time:2016-10-07 PM12:42 CST 0800.

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ncbi36.genepipe.ncgm.sinica.edu.tw

GenePipe! - About us

http://ncbi36.genepipe.ncgm.sinica.edu.tw/us.do

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to Annotation Release 105. About Bioinformatics RD Team. We are a research and development team in Biomedical IT Core. 李中饋 (Chung-Kuei(CK), Li). 陳建谷 (Chien Ku Chen). Institute of Biomedical Sciences, Academia Sinica. Phone: 886-2-2782-5258 ext 4323 FAX: 886-2-2782-4066. Email: genepipe@ibms.sinica.edu.tw. Last update time:2012-10-26 AM11:21 CST 0800.

gpipe.blogspot.com

When Biomedicalit Met Java: Release Notes (2015/02/11)

http://gpipe.blogspot.com/2015/02/release-notes-20150211.html

When Biomedicalit Met Java. Disease Gene Mining Browser. Functional Analysis of Novel SNPs and Mutations. 171; Older Entries. Posted by Wan-Jia in GenePipe. Fix bug of query by Task ID . This entry was posted on 2015年2月11日星期三 at 星期三, 2月 11, 2015 and is filed under GenePipe. You can follow any responses to this entry through the RSS 2.0. You can leave a response. Become our fans at facebook. EMBL Bioinformatic Harvester II 2006/9/26. EMBL Bioinformatic Harvester I 2006/9/19.

gpipe.blogspot.com

When Biomedicalit Met Java: Release Notes (2014/04/03)

http://gpipe.blogspot.com/2014/04/release-notes-20140403.html

When Biomedicalit Met Java. Disease Gene Mining Browser. Functional Analysis of Novel SNPs and Mutations. 171; Older Entries. Posted by Wan-Jia in Affyrmation. Genepipe now is based on human genome assembly, NCBI Annotation Release 104. This entry was posted on 2014年4月3日星期四 at 星期四, 4月 03, 2014 and is filed under Affyrmation. You can follow any responses to this entry through the RSS 2.0. You can leave a response. Become our fans at facebook. EMBL Bioinformatic Harvester II 2006/9/26.

bioit.ncgm.sinica.edu.tw

Welcome to Biomedical IT

http://bioit.ncgm.sinica.edu.tw/link.htm

NCGM Laboratory Information Management System. SamPortal: Clinical Sample Management System. Subject Information Management System.

ncbi36.genepipe.ncgm.sinica.edu.tw

GenePipe Info

http://ncbi36.genepipe.ncgm.sinica.edu.tw/info.do

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to Annotation Release 105. NCBI 36.3 (Human). DNA Sequence 36 version (hs ref chr*.fa.gz). B130 ContigInfo 36 3.bcp.gz. B130 SNPContigLoc 36 3.bcp.gz. Seq gene.md.gz. Seq gene.q.gz. Blast-2.2.22-x64-linux.tar.gz. Seq sts.md.gz. Seq contig.md.gz. GO (go 201011-assocdb-data.gz). Uniprot sprot.dat.gz. Allele frequencies (2010/08 phaseII III). Allele frequencies (Han Chinese in Taiwan). Ftp1000genomes.ebi&...

ncbi36.genepipe.ncgm.sinica.edu.tw

GenePipe : Bioinformatics Pipeline for IBMS Genetic Research

http://ncbi36.genepipe.ncgm.sinica.edu.tw/welcome.do

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to Annotation Release 105. Providing Large-Scale and Comprehensive Annotations on Human Genomic Variants in the Next Generation Sequencing Era. FANS: Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes. Suppl 12):S10 doi:10.1186/1471-2105-9-S12-S10 Full Text. VisualSNP : Robust Functional SNP Prioritization Tool. Streamlining Primer Design for Genes and SNPs. All of the sub-project i...

bioit.ibms.sinica.edu.tw

Welcome to Biomedical IT

http://bioit.ibms.sinica.edu.tw/link.htm

NCGM Laboratory Information Management System. SamPortal: Clinical Sample Management System. Subject Information Management System.

gpipe.blogspot.com

When Biomedicalit Met Java: Introduction to Integrative Genomics Viewer for NGS Analysis

http://gpipe.blogspot.com/2013/09/NGS-Analysis.html

When Biomedicalit Met Java. Disease Gene Mining Browser. Functional Analysis of Novel SNPs and Mutations. 171; Older Entries. Introduction to Integrative Genomics Viewer for NGS Analysis. Posted by Michelle Tsai in 消息. This entry was posted on 2013年9月6日星期五 at 星期五, 9月 06, 2013 and is filed under 消息. You can follow any responses to this entry through the RSS 2.0. You can leave a response. Become our fans at facebook. EMBL Bioinformatic Harvester II 2006/9/26. EMBL Bioinformatic Harvester I 2006/9/19.

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GenePipe : Bioinformatics Pipeline for IBMS Genetic Research

A high performance bioinformatics pipeline for large-scale. Human genomic variation studies. Switch to NCBI 36.3. We launch a new high performance online pipeline with graphical user interface for NGS data analysis. Providing Large-Scale and Comprehensive Annotations on Human Genomic Variants in the Next Generation Sequencing Era. Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes. Suppl 12):S10 doi:10.1186/1471-2105-9-S12-S10 Full Text. Robust Functional SNP Prioritization Tool.

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